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 Search Tools and Software | Sanger Institute

http://www.sanger.ac.uk/science/tools
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REAPR: a universal tool for genome assembly evaluation.   Paper Page   (May 27, 2013)  
EMu: probabilistic inference of mutational processes and their localization in the cancer genome.   Paper Page   (Apr 29, 2013)  
optiCall: a robust genotype-calling algorithm for rare, low-frequency and common variants.   Paper Page   (Jun 15, 2012)  
MouseFinder: Candidate disease genes from mouse phenotype data.   Paper Page   (May, 2012)  
CCRaVAT and QuTie-enabling analysis of rare variants in large-scale case control and quantitative trait association studies.   Paper Page   (Oct 21, 2010)  
A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies.   Paper Page   (May 6, 2010)  
GLIDERS--a web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs.   Paper Page   (Oct 31, 2009)  
DNAPlotter: circular and linear interactive genome visualization.   Paper Page   (Jan 1, 2009)  
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.   Paper Page   (Dec 1, 2008)  
NestedMICA as an ab initio protein motif discovery tool.   Paper Page   (Jan 14, 2008)  
ProServer: a simple, extensible Perl DAS server.   Paper Page   (Jun 15, 2007)  
Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.   Paper Page   (Jun 15, 2007)  
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands.   Paper Page   (Sep 15, 2006)  
Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants.   Paper Page   (Aug, 2006)  
Visualizing profile-profile alignment: pairwise HMM logos.   Paper Page   (Jun 15, 2005)  
AnoEST: toward A. gambiae functional genomics.   Paper Page   (Jun, 2005)  
The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.   Paper Page   (May, 2005)  
iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.   Paper Page   (Feb 1, 2005)  
Rfam: annotating non-coding RNAs in complete genomes.   Paper Page   (Jan 1, 2005)  
Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags.   Paper Page   (Jan, 2005)  
Comparative analysis of apicomplexa and genomic diversity in eukaryotes.   Paper Page   (Sep, 2004)  
Improved techniques for the identification of pseudogenes.   Paper Page   (Aug 4, 2004)  
Complete MHC haplotype sequencing for common disease gene mapping.   Paper Page   (Jun, 2004)  
The genomic sequence and comparative analysis of the rat major histocompatibility complex.   Paper Page   (Apr, 2004)  
HMM Logos for visualization of protein families.   Paper Page   (Jan 21, 2004)  
Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution.   Paper Page   (Jun, 2003)  
Comparative gene prediction in human and mouse.   Paper Page   (Jan, 2003)  
Reevaluating human gene annotation: a second-generation analysis of chromosome 22.   Paper Page   (Jan, 2003)  
Signatures of domain shuffling in the human genome.   Paper Page   (Nov, 2002)  
Comparative ab initio prediction of gene structures using pair HMMs.   Paper Page   (Oct, 2002)  
GAZE: a generic framework for the integration of gene-prediction data by dynamic programming.   Paper Page   (Sep, 2002)  
Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs.   Paper Page   (May, 2002)  
A sequence-based integrated map of chromosome 22.   Paper Page   (Jul, 2001)  
Sequence and analysis of chromosome I of the amitochondriate intracellular parasite Encephalitozoon cuniculi (Microspora).   Paper Page   (Feb, 2001)  
Viral genome organizer: a system for analyzing complete viral genomes.   Paper Page   (Sep, 2000)  
MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.   Paper Page   (Apr, 2000)  
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs.   Paper Page   (Sep, 1999)  
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.   Paper Page   (Jan 1, 1999)  
Sequence assembly with CAFTOOLS.   Paper Page   (Mar, 1998)  
SPEM: a parser for EMBL style flat file database entries.   Paper Page   (1998)