[ 1 ]
Home | XTalkDB
Updated:
(Nov 30, 2016)
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...scientific literature supporting crosstalk between pairs of signaling pathways.Take a tourAdherens junctionAdipocytokine signaling pathwayApoptosisErbB signaling...pathwayWnt signaling pathwaySearchExamples: Wnt signaling pathway Notch signaling pathway and TGF-beta signaling pathwayHow can I...path-based approach for detecting crosstalk between signaling pathways.Crosstalk graphs generated using XTalk shared on...
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[ 2 ]
Early epithelial signaling center governs tooth budding morphogenesis | JCB
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(Sep 13, 2016)
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...we studied the effect of the loss of Eda signaling pathway on the early signaling center G1 cell population. At...signaling center functions to regulate budding morphogenesis via several signaling pathways. First, deficiency in Eda signaling leads to a smaller...Mo, C.C. Hui, and P.T. Sharpe. 1998. The Shh signalling pathway in tooth development: Defects in Gli2 and Gli3 mutants...
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[ 3 ]
jcb.201601014
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(Aug 16, 2016)
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...factor signaling, but rather by a TLR signaling pathway. We present evidence that Toll-6 promotes...is controlled by the activity of several signaling pathways (Calnan and Brunet, 2008). However, the receptor-mediated signaling pathways controlling FoxO activity in developing neurons have...sought to define functions for this proposed signaling pathway at the NMJ. We were particularly interested...
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[ 4 ]
TimePath: Reconstructing temporal signaling pathways
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(Jun 16, 2016)
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...TimePath: Reconstructing temporal signaling pathwaysTimePath: Reconstructing temporal signaling pathways Download TimePathGithub repositoryManualData sourcesGO categoriesTemporal signaling pathway Most methods for reconstructing signaling and regulatory...
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[ 5 ]
Welcome to AraPPINet
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(Jun 11, 2016)
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...resource for discovering gene function in converging signaling pathways and complex traits in plant.Search the...
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[ 6 ]
Welcome to MetastasisWay! - MetastasisWay
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(May 31, 2016)
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...the dynamic nature of cancers. The biological signaling pathways and their role in metastasis are important...
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[ 7 ]
GO Predict
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(May 27, 2016)
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...data from the Cancer Genome Atlas, and signaling pathway information from Gene Ontology. The code for...
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[ 8 ]
10428194.2013.776681
Updated:
(Apr 21, 2016)
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...Jun N-terminal kinase (JNK)/c-Jun signaling pathway in both adriamycin-sensitive K562 and adriamycin...
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[ 9 ]
full
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(Apr 4, 2016)
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...neuroprotection of RSV associated with the AMPK and SIRT1 signaling pathways and cellular energy status in recurrent stroke models.Materials...then harvested and analysed.Analysis of SIRT1 and AMPK signaling pathway induced by RSVTo understand whether SIRT1 and AMPK act...with the Neuman–Keuls post-test).AMPK and SIRT1 signaling pathway induced by RSV in recurrent ischemic strokeResults show that...
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[ 10 ]
Home | PolyQ 2.0
Updated:
(Mar 16, 2016)
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...disordered regions, protein-protein interaction partners, metabolic/signaling pathways, post-translational modification sites and evolutionary information...
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[ 11 ]
full
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(Jan 23, 2016)
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...agents, other than having an impact on immune signalling pathways, although many cytokines have effects on other systems...inflammatory or haematopoietic signalling. Although not an exclusive signalling pathway, a common feature of the majority of cytokine...subfamilies on the basis of sequence comparison and signalling pathways activated, the TGFβ/activin/nodal subfamily and the...
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[ 12 ]
full
Updated:
(Jan 23, 2016)
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...and pharmacological dissections of the retinoic acid signaling pathway during mouse embryogenesis. Annu. Rev. Pharmacol. Toxicol...AC et al. (2010) Liver x receptor signaling pathways and atherosclerosis. Arterioscler. Thromb. Vasc. Biol.30...and pharmacological dissections of the retinoic acid signaling pathway during mouse embryogenesis. Annu. Rev. Pharmacol. Toxicol...via the hippocampal brain-derived neurotrophic factor signalling pathway, British Journal of Pharmacology, 2017, 174, 2...
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[ 13 ]
Software Developed by T. M. Murali's Research Group
Updated:
(Jan 10, 2016)
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...path-based algorithm to reconstruct interactions in signaling pathways. halp, a library of algorithms for directed and undirected hypergraphs. XTalk, a path-based approach for detecting crosstalk between signaling pathways.Data-Driven Systems Biology Concise, Functional Enrichment...
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[ 14 ]
www.colonatlas.org
Updated:
(Jan 7, 2016)
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...sequence variants in proteins involved in Wnt signaling pathway. Identification of sequence variants in genes has...
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[ 15 ]
Bahler Lab
Updated:
(Dec 4, 2015)
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...actin cortical patch assembly•rRNA modification•phosphorelay signal transduction system•MAPK cascade involved in osmosensory signaling pathway•tryptophan biosynthetic process•MAPK cascade•inactivation of MAPK activity involved in osmosensory signaling pathway•chromatin silencing at rDNA•nuclear-transcribed mRNA catabolic process, nonsense-mediated decay•inactivation of MAPK...to DNA damage stimulus•DNA damage induced protein phosphorylation•response to oxidative stress•ER-nucleus signaling pathway•response to unfolded protein•response to sterol depletion•cellular response to nitrogen starvation•organelle organization...
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[ 16 ]
MDP
Updated:
(Dec 2, 2015)
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...transcriptional alterations in specific cancer genes and signaling pathways of for genetic and transcriptional profiles associated...
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[ 17 ]
m3db
Updated:
(Nov 12, 2015)
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...connectivity pattern for each pathway. Moreover predicted signalling pathways can also be analyzed separately along with...
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[ 18 ]
ncRDeathDB
Updated:
(Oct 28, 2015)
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...decades of studies, the molecular features and signal pathways modulating apoptosis have been resolved in great...
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[ 19 ]
RHD_DUFS
Updated:
(Aug 3, 2015)
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...DNA metabolic process| mitochondrial DNA replication| mitochondrial genome maintenance| mitochondrion organization| negative regulation of apoptotic signaling pathway| negative regulation of cell proliferation| negative regulation of intrinsic apoptotic signaling pathway| negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator| negative regulation of signal transduction by p53 class mediator| oxidoreduction coenzyme...
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[ 20 ]
Vertebrate Ohnologs
Updated:
(Jul 18, 2015)
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...ohnologs are known to be associated with signaling pathways and developmental genes in vertebrates and most...
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[ 21 ]
Cancer Fusion Genes
Updated:
(Jul 11, 2015)
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...therapies specifically designed to blunt multiple, alternative signaling pathways. Abstract: Successful use of anti-cancer designer drugs is likely to depend on simultaneous combinations of these drugs to minimize the development of resistant cancer cells. Considering the knowledge base of cancer signaling pathways, mechanisms of designer drug resistance should be...
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[ 22 ]
PATHiVAR
Updated:
(Jul 3, 2015)
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...the deleterious mutations, locate them over the signalling pathways in the selected tissue (with the appropriate expression pattern) and provides a comprehensive, graphic and interactive view of the predicted signal transduction probabilities across the different signalling pathways. Note: PATHiVAR web application makes an intensive...
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[ 23 ]
Software | SYSBIOBIG
Updated:
(Jun 6, 2015)
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...here A rule-based model of insulin signalling pathway The insulin signalling pathway (ISP) is an important biochemical pathway, which...a simple description of a number of signalling pathway characteristics, such as the phosphorylation of signalling proteins at multiple sites with different effects, the simultaneous interaction of many molecules of the signalling pathways with several binding partners, and the information...
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[ 24 ]
Network Search | Causal Bio Network
Updated:
(Apr 18, 2015)
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...from the scientific literature. They represent causal signaling pathways across a wide range of biological processes...within defined biological boundaries for inclusion of signaling pathways within particular context (species, tissues, cell types...
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[ 25 ]
ProteomeXchange Dataset
Updated:
(Feb 14, 2015)
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...proteomics reveals novel factors in the ecdysone signaling pathway in Drosophila melanogaster.Description: Global quantitative proteomics reveals novel factors in the ecdysone signaling pathway in Drosophila melanogaster.SpeciesList: scientific name: Drosophila...proteomics reveals novel factors in the ecdysone signaling pathway in Drosophila melanogaster. Proteomics, 15(4):725...proteomics reveals novel factors in the ecdysone signaling pathway in Drosophila melanogaster.Subscribe to receive all...
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[ 26 ]
PubAngioGen: A comprehensive resource for angiogenesis association studies
Updated:
(Jan 16, 2015)
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...of angiogenesis involved in main diseases and signaling pathways. Considering that the compounds or proteins which...
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[ 27 ]
ProteomeXchange Dataset
Updated:
(Jan 15, 2015)
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...number of components of the three main signaling pathways known to be initiated in response to...comparison of IL-2 and IL-15 signaling pathways by global quantitative phosphoproteomics. Proteomics, 15(2...
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[ 28 ]
ProteomeXchange Dataset
Updated:
(Jan 15, 2015)
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...proinflammatory cytokines. A detailed understanding of the signaling pathways activated by IL-33 remains elusive. To...
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[ 29 ]
SubPhos | Home
Updated:
(Jan 10, 2015)
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...and differentiation through highly dynamic and complex signaling pathways. However, the dynamic interplay of protein phosphorylation...
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[ 30 ]
ProteomeXchange Dataset
Updated:
(Oct 13, 2014)
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...which will provide insight into the IP3 signalling pathways in plants.SpeciesList: scientific name: Rice(O....
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[ 31 ]
Show all
Updated:
(Jul 24, 2014)
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...1 SEP(A) :- drug_has_target(A,B,inhibitor), interact(B,C), pathway(C,'RAC1 signaling pathway',PID) 13,1 SEP(A) :- drug_cluster(A,'7_marinol',HPCCcombo) 8,1 SEP(A...A) :- drug_has_target(A,B,activator), GO_term(B,'G-protein coupled receptor protein signaling pathway'), pathway(B,'Neuroactive ligand-receptor interaction',KEGG), drug_cluster(A,'19_halothane',HPCCchem) 5,0...
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[ 32 ]
WebCite query result
Updated:
(Jul 9, 2014)
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...cellular changes associated with stress and injury signalling pathways will be measured from metabolite/RNA extracts...cellular changes associated with stress and injury signalling pathways will be measured from metabolite/RNA extracts...
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[ 33 ]
Modularized Factor Graph
Updated:
(Jun 27, 2014)
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...a synthetic branching pathway model). (A) Branching signaling pathway composed of total 11 variables (or proteins...Hsu, D. and Thiagarajan, P.S. (2010) Incremental signaling pathway modeling by data integration. In Berger, B....
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Characterization of p38 MAPK isoforms for drug resistance study using systems biology approach.
(Jul 1, 2014)
Characterization of p38 MAPK isoforms for drug resistance study using systems biology approach.
(Jul 1, 2014)
[ 34 ]
ARHMM - Jstacs
Updated:
(Jun 24, 2014)
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...of gene expression levels in known cancer signaling pathways distinguishing oligodendrogliomas, astrocytomas and glioblastomas. Paper The...
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[ 35 ]
capdsd
Updated:
(Jun 16, 2014)
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...cDSD, and augments it with high-confidence signaling pathway datacapDSD extends caDSD by making use of the topological properties of these signaling pathways If you use capDSD, please cite: M....
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[ 36 ]
abstract
Updated:
(May 20, 2014)
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...inflammation, such as the B-cell receptor signaling pathway, while genes decreasing in expression were enriched...with functions in the B-cell receptor signaling pathway were over-represented among the up-regulated...of components of the B cell receptor signaling pathway is associated with a change in the...several components of the B-cell receptor signaling pathway have increased expression in regions of severe...
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[ 37 ]
RegPhos 2.0
Updated:
(Apr 28, 2014)
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...KinomeRat KinomeNetwork AnalysisIntracellular Phosphorylation NetworkB Cell Receptor Signaling Pathway (Experimental Verification)Expression ProfileCancer AnalysisHierarchical ClusteringPredictionStatisticsDownloadSearch a...
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[ 38 ]
StemSight: Exploring Functional Relevance Networks in Stem Cells
Updated:
(Apr 17, 2014)
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...and self-renewal. More than a dozen signaling pathways are implicated in self-renewal, suggesting regulation...with mESC self-renewal or annotated to signaling pathways involved in early embryonic development, based on...data from network graph files for Developmental Signaling Pathway AnalysesDiscover novel genes predicted to be strongly...
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[ 39 ]
PathoPlant
Updated:
(Apr 14, 2014)
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...expression In silico expression analysis cis-elements Signaling pathways Description Documentation Contact Disclaimer For complete...
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[ 40 ]
NetPath - Signal Transduction Pathways
Updated:
(Feb 27, 2014)
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...Bioinformatics. The initial set of 10 cancer signaling pathways were developed in collaboration with the Computational...
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[ 41 ]
BioModels Database
Updated:
(Jan 17, 2014)
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...partially parameterized. In the case of KEGG signaling pathways for which no mechanistic details are provided...
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[ 42 ]
The complexity of NF-κB signaling in inflammation and cancer | Molecular Cancer | Full Text
Updated:
(Nov 15, 2013)
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...as GSK3-β, p38, or PI3K, which modulate NF-κB transcriptional activity or affect upstream signaling pathways. Other classes of molecules that act as nodes of crosstalk are reactive oxygen species and...phosphorylations and other post-translational modifications which are important for activation and crosstalk with other signaling pathways [11]. Binding of NF-κB dimers to IκB molecules does not only prevent binding to...
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Cancer risk in immune-mediated inflammatory diseases: IMID and Cancer Risk.
(2013)
Cancer risk in immune-mediated inflammatory diseases: IMID and Cancer Risk.
(2013)
[ 43 ]
Dataset | BioGPS
Updated:
(Nov 15, 2013)
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...interactions between the TF module and the signaling pathway. Our findings demonstrate regulatory connections between ASCL1...
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An expression atlas of human primary cells: inference of gene function from coexpression networks.
(Sep 20, 2013)
An expression atlas of human primary cells: inference of gene function from coexpression networks.
(Sep 20, 2013)
[ 44 ]
B Cell Proteome
Updated:
(Nov 8, 2013)
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...revealed shared Gene Ontology (GO) terms and signaling pathways within the clusters of co-expressed proteins (see Tables 1-2). To view all identified proteins (listed in Supplementary Table 2) click on the Reference gel. Tables: Table 1. Enriched GO terms and their p-values for co-expressed proteins Table 2. Signalling pathways and identified proteins involved. Supplementary Table 1...
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[ 45 ]
Journal:JBSD:28 - Proteopedia, life in 3D
Updated:
(Oct 9, 2013)
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...plays an important role in regulating metabolic signaling pathways in various organisms. Sirt1 is a potential...
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[ 46 ]
PKIS
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(Aug 29, 2013)
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...valuable bioinformatics tool for identifying the novel signal pathways or even drug development.ReferenceZou L, Wang...
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PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites.
(Aug 13, 2013)
PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites.
(Aug 13, 2013)
[ 47 ]
SDREM: Signaling and Dynamic Regulatory Events Miner
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(Jul 1, 2013)
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...Accurate models of the cross talk between signaling pathways and transcriptional regulatory networks within cells are...2, 2013. Identifying proteins controlling key disease signaling pathways. Anthony Gitter, Ziv Bar-Joseph. Bioinformatics. 29...
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[ 48 ]
SPEDRE: Systematic Parameter Estimation in Data-Rich Environments for Cell Signaling Dynamics
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(Apr 15, 2013)
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...2010) Estimating Reaction Rate Parameters in Cell Signaling Pathways Using Extreme Decomposition and Belief Propagation Tailored...
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Systematic parameter estimation in data-rich environments for cell signalling dynamics.
(Apr 15, 2013)
Systematic parameter estimation in data-rich environments for cell signalling dynamics.
(Apr 15, 2013)
[ 49 ]
Bioconductor - CellNOptR
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(Mar 21, 2013)
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...does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and...
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[ 50 ]
NetEffects
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(Dec 19, 2012)
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...on the Insulin/Insulin-like Growth Factor Signalling Pathway in Drosophila melanogaster and Caenorhabtitis elegans and...for analysisThe Insulin/Insulin-like Growth Factor Signaling Pathway in Caenorhabtitis elegans. The Insulin/Insulin-like Growth Factor Signaling Pathway in Drosophila melanogaster. The Insulin/Insulin-like Growth Factor Signaling Pathway in Mus musculus. How to cite NetEffectsUsing Answer Set Programming to Integrate RNA Expression with Signalling Pathway Information to Infer How Mutations Affect Ageing...
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