[ 1 ]
BIG Data Center
Updated:
(Nov 30, 2016)
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...Pangenome Genome-organization-framework AssistedAssembly Pipeline (GAAP)Sequence Analysis Composition AnalysisToolkit (CAT)KaKs_CalculatorParallel Alignment & back...
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[ 2 ]
BTSS finder
Updated:
(Oct 3, 2016)
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...an attractive problem in the field of sequence analysis. In a bacterial genome, the transcription start...
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[ 3 ]
CCB Software
Updated:
(Aug 26, 2016)
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...with an accuracy of 99.99%.Other sequence analysis toolsBRCA gene testing a computational screening test...of links (now very old) to external sequence analysis programs. The Center for Computational Biology at...
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[ 4 ]
Regulatory Sequence Analysis Tools (RSAT)
Updated:
(Aug 25, 2016)
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...es/rsat/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools (RSAT) Your browser cannot handle frames. You can access rsa tools by connecting the no frames version. http://floresta.eead.csic.es/rsat/toc.html text/html; charset=us-ascii Regulatory Sequence Analysis Tools menuRSATNeAT New items > view all toolsGenomes and...
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[ 5 ]
Gall-ID | Welcome
Updated:
(Aug 22, 2016)
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...bacterial isolates from plant galls. Multi-locus sequence analysis (MLSA) data for Agrobacterium and/or Rhodocccus...
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[ 6 ]
Introduction - MEME Suite
Updated:
(May 7, 2016)
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...finger nuclease systems. The MEME SuiteMotif-based sequence analysis toolsMEMEMultiple Em for Motif ElicitationCentriMoLocal Motif Enrichment...
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[ 7 ]
Sequence Analysis - Universität Ulm
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(Feb 6, 2016)
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...research/seqana/ text/html; charset=utf-8 Sequence Analysis - Universität UlmInstitut für Theoretische Informatik...Theoretische Informatik I Proseminar Graphalgorithmen ForschungForschung EDACC Sequence Analysis SAT Solving Dichte Packung von Garnrollen auf...Henning Wunderlich SonstigesSonstiges Startseite Adresse Impressum EN Sequence Analysis Space-efficient Parallel Construction of Succinct Representations...
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[ 8 ]
AlzBase
Updated:
(Jan 7, 2016)
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...Pangenome Genome-organization-framework AssistedAssembly Pipeline (GAAP)Sequence Analysis Composition AnalysisToolkit (CAT)KaKs_CalculatorParallel Alignment & back...
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AlzBase: an Integrative Database for Gene Dysregulation in Alzheimer's Disease. (Jan, 2016)
AlzBase: an Integrative Database for Gene Dysregulation in Alzheimer's Disease. (Jan, 2016)
[ 9 ]
Macromolecular Complexes
Updated:
(Oct 8, 2015)
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...html; charset=us-ascii Macromolecular Complexes Structure-sequence analysis of macromolecular complexes HomeDocumentationExample: S7p © 2013...
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[ 10 ]
Welcome to the Immcantation Portal! — Immcantation documentation
Updated:
(Oct 8, 2015)
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...Practical guidelines for B-cell receptor repertoire sequencing analysis. Genome Med 2015; 7:121. doi: 10...
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Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. (Oct 15, 2015)
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. (Oct 15, 2015)
[ 11 ]
IMSEQ - IMmunogenetic SEQuence Analysis
Updated:
(Sep 11, 2015)
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...utf-8 IMSEQ - IMmunogenetic SEQuence AnalysisIMSEQ - IMmunogenetic SEQuence Analysis AboutIMSEQ is a fast, PCR and sequencing...fast and error aware approach to immunogenetic sequence analysis. Bioinformatics. 2015;31(18):2963â71...
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IMSEQ-a fast and error aware approach to immunogenetic sequence analysis. (Sep 15, 2015)
IMSEQ-a fast and error aware approach to immunogenetic sequence analysis. (Sep 15, 2015)
[ 12 ]
GeneTIER
Updated:
(Aug 8, 2015)
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...electropherogram analysisNext Generation SequencingPrograms for next generation sequence analysis.Other softwarePrograms for performing miscellaneous data manipulation
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[ 13 ]
SHIFTASA: Prediction of fractional ASA from Backbone Chemical Shifts and Sequence.
Updated:
(Jul 7, 2015)
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...learning with the added benefits of advanced sequence analysis to accurately estimate fASA via chemical shift...
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[ 14 ]
Regulatory Sequence Analysis Tools - Main portal
Updated:
(Jul 3, 2015)
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25904632 http://www.rsat.eu/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools - Main portalClick herehttp://pedagogix-tagc.univ-mrs.fr/rsat/RSAT_portal.html text/html; charset=us-ascii Regulatory Sequence Analysis ToolsRegulatory Sequence Analysis Tools Welcome to Regulatory Sequence Analysis Tools (RSAT). This web site provides a series of modular computer programs specifically designed for...
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[ 15 ]
Hunt Lab
Updated:
(Jun 20, 2015)
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...html; charset=us-ascii Electron Transfer DissociationPeptide Sequence Analysis by ETD Mass Spectrometry Welcome to Professor Donald Hunt's tutorial on peptide sequence analysis by electron transfer dissociation (ETD) mass spectrometry...also be of interest: Peptide and Protein Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry, J.E....
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[ 16 ]
Whiteboard main page
Updated:
(Jun 15, 2015)
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...from: Yang H et al. Deep mRNA Sequencing Analysis to Capture the Transcriptome Landscape of Zebrafish...
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Whiteboard: a framework for the programmatic visualization of complex biological analyses. (Jun 15, 2015)
Whiteboard: a framework for the programmatic visualization of complex biological analyses. (Jun 15, 2015)
[ 17 ]
Bradyrhizobium MLSA
Updated:
(Jun 4, 2015)
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...few species have been delineated. The multilocus sequence analysis (MLSA) methodology, which includes analysis of housekeeping...
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[ 18 ]
StatAlign – Home
Updated:
(Apr 18, 2015)
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...text/html; charset=us-ascii StatAlign – HomeMultiple sequence analysis in the presence alignment uncertainty, using directed...
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[ 19 ]
fastaptamer.html
Updated:
(Mar 4, 2015)
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...FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections." Molecular Therapy — Nucleic Acids. 2015. 4, e230; DOI: 10.1038/mtna.2015.4FASTAptamer is an easy-to-use and universally compatible toolkit designed for bench scientists to address the primary sequence analysis needs from high-throughput sequencing of combinatorial...
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FASTAptamer: A Bioinformatic Toolkit for High-throughput Sequence Analysis of Combinatorial Selections. (Mar 3, 2015)
FASTAptamer: A Bioinformatic Toolkit for High-throughput Sequence Analysis of Combinatorial Selections. (Mar 3, 2015)
[ 20 ]
A Visualization-aided Variant Annotation Tool
Updated:
(Feb 5, 2015)
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...MiSeq, providing a complete solution for targeted sequencing analysis. Vanno can process at least 100 samples...
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[ 21 ]
AtGenExpress JPN
Updated:
(Jan 22, 2015)
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...data focusing on exon combinations from RNA sequencing analysis under nutient deficiencies. Contents...Data contributed...
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[ 22 ]
Tree shrew Database
Updated:
(Nov 21, 2014)
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...in the database to facilitate automatic gene sequence analysis. It is our hope that the Treeshrew...
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[ 23 ]
Bioinformatics, University of Wuerzburg
Updated:
(Aug 15, 2014)
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...data can be acquired from several different sequence analysis programs in flexible formats. Automatic dot-plot...data from PhosphoSite and complemented by bioinformatical sequence analysis for site-specific kinase predictions. The integration...Würzburg, Am Hubland,Würzburg, Germany. BACKGROUND: In sequence analysis the multiple alignment builds the fundament of...
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[ 24 ]
Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical Wiki
Updated:
(Aug 12, 2014)
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...org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline text/html; charset=utf-8 Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical WikiWhole Exome Sequencing Analysis PipelineFrom Mood Disorders Analytical Wiki Jump to: navigation, searchWhole Exome Sequencing Analysis Pipeline The pipeline contains the following steps...org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline&oldid=1666" Category: NGS ExomeNavigation menuPersonal...
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[ 25 ]
Carnation DB
Updated:
(Jun 18, 2014)
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...S, Kishida Y, Kohara M, Tabata S Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus...
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[ 26 ]
Systems Biology and Bioinformatics | King Mongkut's University of Technology Thonburi
Updated:
(Nov 15, 2013)
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...journal clubTITLE: Bio-Database in Melanoma Exome sequencing Analysis. DATE: Tuesday,June 23,2015 1.30...
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[ 27 ]
gobics.de: Software
Updated:
(Oct 30, 2013)
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...alignments (Bielefeld) AGenDA - Gene prediction by comparative sequence analysis (Bielefeld...
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[ 28 ]
Home - NGS++
Updated:
(Jul 17, 2013)
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...not NGS++?NGS++ is not specialized in sequence analysis. If you are looking to work with...
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NGS++: a library for rapid prototyping of epigenomics software tools. (Aug 1, 2013)
NGS++: a library for rapid prototyping of epigenomics software tools. (Aug 1, 2013)
[ 29 ]
inmembrane
Updated:
(May 31, 2013)
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...using web services and/or locally installed sequence analysis packages. inmembrane runs on Linux, OS X...You want to make your own protein sequence analysis work-flow, and would like to use...pypi/pip HMMER: this is the only sequence analysis software that is required to be locally...
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Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes. (2013)
Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes. (2013)
[ 30 ]
EDAM
Updated:
(May 16, 2013)
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...about non-positional sequence features, typically a report on general molecular sequence properties derived from sequence analysis." [http://edamontology.org] namespace: data is_a: EDAM_data:2955 ! Sequence report [Term] id: EDAM...namespace: data is_a: EDAM_data:3031 ! Core data relationship: has_topic EDAM_topic:0080 ! Sequence analysis [Term] id: EDAM_data:2046 name: Sequence record lite (nucleic acid) subset: bioinformatics subset: data...
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EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. (May 15, 2013)
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. (May 15, 2013)
[ 31 ]
MotifLab - Regulatory Sequence Analysis Workbench
Updated:
(Jan 25, 2013)
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...text/html; charset=us-ascii MotifLab - Regulatory Sequence Analysis WorkbenchHomeNewsDownloadScreenshotsDocumentationUser ManualVideo TutorialsPublicationsConference PresentationsBioRegSIG 20114th StatSeq Workshop...
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[ 32 ]
LOESS correction for length variation in gene set-based genomic sequence analysis
Updated:
(May 22, 2012)
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...length variation in gene set-based genomic sequence analysis Anton Aboukhalil1,2 and Martha L. Bulyk2...
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LOESS correction for length variation in gene set-based genomic sequence analysis. (Jun 1, 2012)
LOESS correction for length variation in gene set-based genomic sequence analysis. (Jun 1, 2012)
[ 33 ]
Recall
Updated:
(May 18, 2012)
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...ascii RecallRECall (beta v3.02) - Web based sequence analysis Login:Password: If you do not...
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Automating HIV Drug Resistance Genotyping with RECall, a Freely Accessible Sequence Analysis Tool. (Jun, 2012)
Automating HIV Drug Resistance Genotyping with RECall, a Freely Accessible Sequence Analysis Tool. (Jun, 2012)
[ 34 ]
PIntron
Updated:
(Apr 27, 2012)
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...Assembly Algorithms for omics dataCombinatorial Structures for Sequence Analysis in BioinformaticsComputability in Europe 2013SoftwarePIntronLight String GraphHapColreHCstarHeu...
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[ 35 ]
Home Page of TumorHoPe a Database of Tumor Homing Peptides
Updated:
(Apr 23, 2012)
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...and payloads used have also been incorporated. Sequence analysis of peptides: We have computed amino acid...
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[ 36 ]
Home - Translational Pediatrics
Updated:
(Jan 31, 2012)
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...Sankaran, Chandima Karunanayake, Alan M RosenbergCloning and sequence analysis of SLC25A13 transcripts in human amniocytesZhan-Hui...Majaesic, Christopher Skappak, Adrian B. JonesCloning and sequence analysis of SLC25A13 transcripts in human amniocytesZhan-Hui...
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[Vitamin D intake in young children with acute lower respiratory infection]. (Jan, 2012)
[Vitamin D intake in young children with acute lower respiratory infection]. (Jan, 2012)
[ 37 ]
The Platelet Web - Systems Biology Workbench
Updated:
(Jan 20, 2012)
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...data from PhosphoSite and complemented by bioinformatical sequence analysis for site-specific kinase predictions. The integration...
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PlateletWeb: a systems biologic analysis of signaling networks in human platelets. (Jan 19, 2012)
PlateletWeb: a systems biologic analysis of signaling networks in human platelets. (Jan 19, 2012)
[ 38 ]
WebMGA | Home
Updated:
(Sep 29, 2011)
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...a Customizable Web Server for Fast Metagenomic Sequence Analysis", BMC Genomics 2011, 12:444...
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WebMGA: a customizable web server for fast metagenomic sequence analysis. (Sep 7, 2011)
WebMGA: a customizable web server for fast metagenomic sequence analysis. (Sep 7, 2011)
[ 39 ]
InterPro Biomart < InterPro < EMBL-EBI
Updated:
(Jul 25, 2011)
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...properly (Click here to enable JavaScript). InterProProtein sequence analysis & classification Examples: IPR020405, kinase, P51587, PF02932, GO...
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The InterPro BioMart: federated query and web service access to the InterPro Resource. (2011)
The InterPro BioMart: federated query and web service access to the InterPro Resource. (2011)
[ 40 ]
Taxonomy of Stenotrophomonas and related bacteria
Updated:
(Jul 8, 2011)
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...establish an online electronic taxonomy. The Multilocus Sequence Analysis (MLSA) is an alternative to these limitations...
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An MLSA-based online scheme for the rapid identification of Stenotrophomonas isolates. (Jun, 2011)
An MLSA-based online scheme for the rapid identification of Stenotrophomonas isolates. (Jun, 2011)
[ 41 ]
RPs [PIR - Protein Information Resource]
Updated:
(May 10, 2011)
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...stable, scalable and unbiased proteome set for sequence analysis and functional annotationRelease 2017_04, April 12...stable, scalable and unbiased proteome set for sequence analysis and functional annotation.PLoS One. 2011 Apr...
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Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation. (Apr 27, 2011)
Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation. (Apr 27, 2011)
[ 42 ]
miRNAKey :: A software for the analysis of microRNA Deep Sequencing data
Updated:
(Oct 8, 2010)
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...Shomron. miRNAkey: a software for microRNA Deep Sequencing analysis. Bioinformatics 2010; doi: 10.1093/bioinformatics/btq493...
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[ 43 ]
USEARCH
Updated:
(Sep 24, 2010)
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...throughput search and clusteringUSEARCH is a unique sequence analysis tool with thousands of users world-wide...
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[ 44 ]
CircuitsDB
Updated:
(Sep 10, 2010)
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...and mouse genomes, based on a bioinformatic sequence-analysis work.In particular, this web-site is...These circuits were assembled throught a bioinformatic sequence-analysis pipeline, applied to the human and mouse...
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[ 45 ]
IDA@SMU: Intelligent Data Analysis Lab - Southern Methodist University
Updated:
(Sep 8, 2010)
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...Genomics (QuasiAlign)Streams (TRACDS)recommenderlabarulesseriationAffiliationEMIS, CSELyle, SMUEMM Sequence Analysis (EMMSA)The Extensible Markov Model (EMM, see...Dunham, M. HahslerDeveloped SoftwareSlide Presentation: Next Generation Sequence Analysis with EMM.EMMSA Researcher Guide.JAR, Source and Data: Prokaryotic Builder/Classifier/DifferentiatorR programs for preprocessing sequences for EMMSA tools.PublicationsR.M. Kotamarti. "Quasi alignment methods for molecular sequence analysis," PhD Thesis, SMU, 2010. R.M. Kotamarti, M....
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Analyzing taxonomic classification using extensible Markov models. (Sep 15, 2010)
Analyzing taxonomic classification using extensible Markov models. (Sep 15, 2010)
[ 46 ]
CIGD (Cancer Related Immunological Gene Database)
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(Aug 11, 2010)
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...Moreover, the CIG-DB is equipped with sequence analysis tools based on BLAST and CLUSTALW, which...
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[ 47 ]
SBSPKS
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(Jun 25, 2010)
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... Structure Based Sequence Analysis of Polyketide Synthaseshttp://202.54.249...and Mohanty, D. (2010) SBSPKS: Structure based sequence analysis of polyketide synthases. ...
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[ 48 ]
magicviewer
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(Jun 25, 2010)
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...for database submission Factor 5 speedup of sequence analysis while at the same time achieving better...
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[ 49 ]
ergatis
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(Jun 9, 2010)
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...CloVR is a virtual applicance for automated sequence analysis that supports cloud computing platforms, including Amazon...
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Ergatis: a web interface and scalable software system for bioinformatics workflows. (Jun 15, 2010)
Ergatis: a web interface and scalable software system for bioinformatics workflows. (Jun 15, 2010)
[ 50 ]
QSVanalyser - information
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(Dec 7, 2009)
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...electropherogram analysisNext Generation SequencingPrograms for next generation sequence analysis.Other softwarePrograms for performing miscellaneous data manipulation
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Inferring relative proportions of DNA variants from sequencing electropherograms. (Dec 15, 2009)
Inferring relative proportions of DNA variants from sequencing electropherograms. (Dec 15, 2009)