OReFiL: an Online Resource Finder for Lifesciences

[ 1 ] Regulatory Sequence Analysis Tools - Main portal

Updated: (Jul 3, 2015) Rate Avg:

( no ratings )

25904632 http://www.rsat.eu/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools - Main portalClick herehttp://pedagogix-tagc.univ-mrs.fr/rsat/RSAT_portal.html text/html; charset=us-ascii Regulatory Sequence Analysis ToolsRegulatory Sequence Analysis Tools Welcome to Regulatory Sequence Analysis Tools (RSAT). This web site provides a series of modular computer programs specifically designed for...

MeSH:

http://www.rsat.eu/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
RSAT 2015: Regulatory Sequence Analysis Tools.

(Jul 1, 2015)

Close

[ 2 ] Regulatory Sequence Analysis Tools (RSAT)

Updated: (Aug 25, 2016) Rate Avg:

( no ratings )

...es/rsat/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools (RSAT) Your browser cannot handle frames. You can access rsa tools by connecting the no frames version. http://floresta.eead.csic.es/rsat/toc.html text/html; charset=us-ascii Regulatory Sequence Analysis Tools menuRSATNeAT New items > view all toolsGenomes and...

MeSH:

http://floresta.eead.csic.es/rsat/ - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 3 ] Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical Wiki

Updated: (Aug 12, 2014) Rate Avg:

( no ratings )

...org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline text/html; charset=utf-8 Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical WikiWhole Exome Sequencing Analysis PipelineFrom Mood Disorders Analytical Wiki Jump to: navigation, searchWhole Exome Sequencing Analysis Pipeline The pipeline contains the following steps...org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline&oldid=1666" Category: NGS ExomeNavigation menuPersonal...

MeSH:

http://metamoodics.org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 4 ] eMLSA

Updated: (Feb 6, 2009) Rate Avg:

( no ratings )

...of multiple core (house-keeping) genes to assess clustering patterns, and has been called multilocus sequence analysis (MLSA; Gevers et al., 2005; Hanage et al., 2006), or multilocus sequence phylogenetic analysis (Nørskov...relationships among similar species may be confounded by interspecies recombination. A more promising approach (multilocus sequence analysis, MLSA) is to concatenate the sequences of multiple house-keeping loci and to observe the...

MeSH:

http://www.emlsa.net/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Assigning strains to bacterial species via the internet.

(Jan 26, 2009)

Close

[ 5 ] InterPro protein sequence analysis & classification < InterPro < EMBL-EBI

Updated: (Jun 23, 2003) Rate Avg:

( no ratings )

...text/html; charset=utf-8 InterPro protein sequence analysis & classification ...properly (Click here to enable JavaScript). InterProProtein sequence analysis & classification Examples: IPR020405, kinase, P51587, PF02932, GO:0007165HomeSearchRelease notesDownloadAbout InterProHelpContactBy sequenceBy domain architectureTraining & tutorialsFAQsDocumentationInterPro: protein sequence analysis & classificationInterPro provides functional analysis of proteins by...2.4Mb) | All publicationsTools InterProScanInterProScan is a sequence analysis application (nucleotide and protein sequences) that combines...

MeSH:

http://www.ebi.ac.uk/interpro/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
The comparative proteomics of ubiquitination in mouse.

(Jun, 2003)

Close

[ 6 ] IDA@SMU: Intelligent Data Analysis Lab - Southern Methodist University

Updated: (Sep 8, 2010) Rate Avg:

( no ratings )

...Genomics (QuasiAlign)Streams (TRACDS)recommenderlabarulesseriationAffiliationEMIS, CSELyle, SMUEMM Sequence Analysis (EMMSA)The Extensible Markov Model (EMM, see...Dunham, M. HahslerDeveloped SoftwareSlide Presentation: Next Generation Sequence Analysis with EMM.EMMSA Researcher Guide.JAR, Source and Data: Prokaryotic Builder/Classifier/DifferentiatorR programs for preprocessing sequences for EMMSA tools.PublicationsR.M. Kotamarti. "Quasi alignment methods for molecular sequence analysis," PhD Thesis, SMU, 2010. R.M. Kotamarti, M....

MeSH:

http://lyle.smu.edu/IDA/EMMSA/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Analyzing taxonomic classification using extensible Markov models.

(Sep 15, 2010)

Close

[ 7 ] FamilyJewels: tools for comparative sequence analysis

Updated: (Apr 28, 2005) Rate Avg:

( no ratings )

...charset=us-ascii FamilyJewels: tools for comparative sequence analysis FamilyJewelsTools for Comparative Sequence Analysis This is the home page for the...start with the introduction to doing comparative sequence analysis with FamilyRelations II. If you are interested...Brown, as part of his tools for sequence analysis. Related Projects:SeqComp is the program originally...

MeSH:

http://family.caltech.edu/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison.

(Mar 24, 2005)

Close

[ 8 ] Hunt Lab

Updated: (Jun 20, 2015) Rate Avg:

( no ratings )

...html; charset=us-ascii Electron Transfer DissociationPeptide Sequence Analysis by ETD Mass Spectrometry Welcome to Professor Donald Hunt's tutorial on peptide sequence analysis by electron transfer dissociation (ETD) mass spectrometry...also be of interest: Peptide and Protein Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry, J.E....

MeSH:

http://www.huntlab.org/ - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 9 ] Bionformatics for Comparative (Organelle) Genomics

Updated: (Aug 31, 2000) Rate Avg:

( no ratings )

...bioinformatics tools listed below assist in genome sequence analysis and megasequencing project management. They have been...formulas from M. Waterman Tools assisting DNA sequence analysis:FLIP, basic sequence analysis tool (ORF identification, conversion to reverse/complementary...

MeSH:

http://megasun.bch.umontreal.ca/ogmp/ogmpid.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
The complete mitochondrial DNA sequence of Scenedesmus obliquus reflects an intermediate stage in the evolution of the green algal mitochondrial genome.

(Jun, 2000)

Close

[ 10 ] inmembrane

Updated: (May 31, 2013) Rate Avg:

( no ratings )

...using web services and/or locally installed sequence analysis packages. inmembrane runs on Linux, OS X...You want to make your own protein sequence analysis work-flow, and would like to use...pypi/pip HMMER: this is the only sequence analysis software that is required to be locally...

MeSH:

http://boscoh.github.io/inmembrane/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes.

(2013)

Close

[ 11 ] www.phyloware

Updated: (Nov 17, 2009) Rate Avg:

( no ratings )

...Â Â Â XplorSeqMac OSX software for sequence analysis***Note:Â The NCBI client provided by versions of XplorSeq earlier than 1.0.7 is deprecated.Â Please download a new release of XplorSeq. XplorSeq ToolKitToolkit of sequence analysis software.Â Includes C and C++ libraries...

MeSH:

http://www.phyloware.com/Phyloware/Home.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing.

(Oct 29, 2009)

Close

[ 12 ] About GATA

Updated: (Jan 31, 2005) Rate Avg:

( no ratings )

...GATAGATA (a Graphic Alignment Tool for Comparative Sequence Analysis) GATA is a stand alone, platform independent, graphic alignment tool for comparative sequence analysis. It makese use of BLAST to graphically...

MeSH:

http://gata.sourceforge.net/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
GATA: a graphic alignment tool for comparative sequence analysis.

(2005)

Close

[ 13 ] InterProScan < Protein Functional Analysis < EMBL-EBI

Updated: (Jun 27, 2005) Rate Avg:

( no ratings )

...properly (Click here to enable JavaScript). InterProProtein sequence analysis & classification Examples: IPR020405, kinase, P51587, PF02932, GO...LitePhobiusSignalPTMHMMSubmitClear Example protein sequenceInterProsScan InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines...

MeSH:

http://www.ebi.ac.uk/interpro/scan.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
InterProScan: protein domains identifier.

(Jul 1, 2005)

Close

[ 14 ] Coronavirus HKU1 study - home

Updated: (Jan 15, 2008) Rate Avg:

( no ratings )

...known coronaviruses and provides some tools for sequence analysis.Website structureCoVDB: A database for batch coronavirus sequences retrieving. Genome describes the genome organization, characters (RNA structures, TRS regions, polyprotein cleavage sites) of coronaviruses.Tools provides some simple sequence analysis tools. You may check Publications, Contact information...

MeSH:

http://covdb.microbiology.hku.hk:8080/COV-newpages/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
CoVDB: a comprehensive database for comparative analysis of coronavirus genes and genomes.

(Jan, 2008)

Close

[ 15 ] fastaptamer.html

Updated: (Mar 4, 2015) Rate Avg:

( no ratings )

...FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections." Molecular Therapy — Nucleic Acids. 2015. 4, e230; DOI: 10.1038/mtna.2015.4FASTAptamer is an easy-to-use and universally compatible toolkit designed for bench scientists to address the primary sequence analysis needs from high-throughput sequencing of combinatorial...

MeSH:

http://burkelab.missouri.edu/fastaptamer.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
FASTAptamer: A Bioinformatic Toolkit for High-throughput Sequence Analysis of Combinatorial Selections.

(Mar 3, 2015)

Close

[ 16 ] IMP Bioinformatics Group

Updated: (Jun 25, 2003) Rate Avg:

( no ratings )

...similar and complementary tools available for protein sequence analysis, it can be valuable to consider the predictions from many tools at once.Using meta-analysis of different prediction results one can typically derive far reaching conclusions that can not be obtained using one automatic procedures alone. Results of such analyses are listed above under "Sequence Analysis...

MeSH:

http://mendel.imp.ac.at/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-Pi, NMT and PTS1.

(Jul 1, 2003)

Close

[ 17 ] SynView :: User Guide

Updated: (Sep 7, 2006) Rate Avg:

( no ratings )

...2005) Synbrowse: A synteny browser for comparative sequence analysis. Bioinformatics, 21, 3461-3468. Puiu, D., et...Sciences SynBrowse: A Synteny Browser for Comparative Sequence Analysis Sybil: Web-based Software for Comparative Genomics...

MeSH:

http://eupathdb.org/apps/SynView/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
SynView: a GBrowse-compatible approach to visualizing comparative genome data.

(Sep 15, 2006)

Close

[ 18 ] TEMs

Updated: (Dec 17, 2001) Rate Avg:

( no ratings )

...Supplementary-SAGE-Seq.analysis MethodsFAQ In-depth Sequence-analysis Study of Proteins Differentially Expressed in Tumor...of on-line sites of the applied sequence analysis techniques a short overview on the sage...

MeSH:

http://mendel.imp.ac.at/SEQUENCES/TEMS/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Can molecular mechanisms of biological processes be extracted from expression profiles? Case study: endothelial contribution to tumor-induced angiogenesis.

(Dec, 2001)

Close

[ 19 ] IMSEQ - IMmunogenetic SEQuence Analysis

Updated: (Sep 11, 2015) Rate Avg:

( no ratings )

...utf-8 IMSEQ - IMmunogenetic SEQuence AnalysisIMSEQ - IMmunogenetic SEQuence Analysis AboutIMSEQ is a fast, PCR and sequencing...fast and error aware approach to immunogenetic sequence analysis. Bioinformatics. 2015;31(18):2963â71...

MeSH:

http://www.imtools.org/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
IMSEQ-a fast and error aware approach to immunogenetic sequence analysis.

(Sep 15, 2015)

Close

[ 20 ] CGView - Overview

Updated: (Feb 11, 2005) Rate Avg:

( no ratings )

...formats or in Scalable Vector Graphics format. Sequence analysis visualization - CGView can be used to display the output of sequence analysis programs in a circular context. CGView features...

MeSH:

http://wishart.biology.ualberta.ca/cgview/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Circular genome visualization and exploration using CGView.

(Feb 15, 2005)

Close

[ 21 ] CircuitsDB

Updated: (Sep 10, 2010) Rate Avg:

( no ratings )

...and mouse genomes, based on a bioinformatic sequence-analysis work.In particular, this web-site is...These circuits were assembled throught a bioinformatic sequence-analysis pipeline, applied to the human and mouse...

MeSH:

http://biocluster.di.unito.it/circuits/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.

(2010)

Close

[ 22 ] GPI in complete genomes

Updated: (Apr 5, 2001) Rate Avg:

( no ratings )

...Lipid Anchor Project GPI Lipid Anchor Project Sequence analysis of GPI-anchored proteins on the proprotein...be characterized as GPI-anchored. Previous work: Sequence analysis of GPI-anchored proteins on the proprotein...

MeSH:

http://mendel.imp.ac.at/gpi/gpi_genomes.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomes.

(Jan, 2001)

Close

[ 23 ] RPs [PIR - Protein Information Resource]

Updated: (May 10, 2011) Rate Avg:

( no ratings )

...stable, scalable and unbiased proteome set for sequence analysis and functional annotationRelease 2017_04, April 12...stable, scalable and unbiased proteome set for sequence analysis and functional annotation.PLoS One. 2011 Apr...

MeSH:

http://pir.georgetown.edu/rps/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.

(Apr 27, 2011)

Close

[ 24 ] psipred : index

Updated: (Mar 22, 2007) Rate Avg:

( no ratings )

...ServerServer OverviewServer CitationHelp & TutorialsNewsHistorySoftware DownloadThe PSIPRED Protein Sequence Analysis WorkbenchThe PSIPRED Protein Sequence Analysis Workbench aggregates several UCL structure prediction methods...

MeSH:

http://bioinf.cs.ucl.ac.uk/psipred/ - PubMed:2 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Improving the accuracy of transmembrane protein topology prediction using evolutionary information.

(Mar 1, 2007)
The DISOPRED server for the prediction of protein disorder.

(Sep 1, 2004)

Close

[ 25 ] Group I intron Sequence and Structure Database

Updated: (Jan 15, 2008) Rate Avg:

( no ratings )

...containing secondary structure predicted by integrating comparative sequence analysis and minimal free energy algorithms. These introns...called group I ribozymes (Cech, 1990). Comparative sequence analysis reveals a common secondary structure of all...group I catalytic introns based on comparative sequence analysis. J. Mol. Biol., 216, 585-610. Rangan...R.R., Cech T.R.(1997) Mutagenesis and comparative sequence analysis of a base triple joining the two...

MeSH:

http://www.rna.whu.edu.cn/gissd/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
GISSD: Group I Intron Sequence and Structure Database.

(Jan, 2008)

Close

[ 26 ] SBSPKS

Updated: (Jun 25, 2010) Rate Avg:

( no ratings )

... Structure Based Sequence Analysis of Polyketide Synthaseshttp://202.54.249...and Mohanty, D. (2010) SBSPKS: Structure based sequence analysis of polyketide synthases. ...

MeSH:

http://202.54.249.142/~pksdb/sbspks/master.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
SBSPKS: structure based sequence analysis of polyketide synthases.

(Jul, 2010)

Close

[ 27 ] Sequence Analysis - Universität Ulm

Updated: (Feb 6, 2016) Rate Avg:

( no ratings )

...research/seqana/ text/html; charset=utf-8 Sequence Analysis - UniversitÃ¤t UlmInstitut fÃ¼r Theoretische Informatik...Theoretische Informatik I Proseminar Graphalgorithmen ForschungForschung EDACC Sequence Analysis SAT Solving Dichte Packung von Garnrollen auf...Henning Wunderlich SonstigesSonstiges Startseite Adresse Impressum EN Sequence Analysis Space-efficient Parallel Construction of Succinct Representations...

MeSH:

http://www.uni-ulm.de/in/theo/research/seqana/ - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 28 ] Supplementary

Updated: (Apr 8, 2008) Rate Avg:

( no ratings )

...was used as testing set. ClustalX (Multiple sequence analysis) MUltilpe sequence analysis of seven different functions of exotoxins are available. click here for clustalx sequence analysis. PDB codes of bacterial toxins are available...

MeSH:

http://www.imtech.res.in/raghava/btxpred/supplementary.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
BTXpred: prediction of bacterial toxins.

(2007)

Close

[ 29 ] Uri's archived Cornell home page

Updated: (Oct 13, 2008) Rate Avg:

( no ratings )

...as well as practical aspects of biological sequence analysis. While the more theoretical face of my...07, Spring 08, Fall 08CS 628 - Biological Sequence Analysis: Fall 04 Spring 06, Fall 07, CS...

MeSH:

http://www.cs.cornell.edu/~keich/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast.

(Sep 12, 2008)

Close

[ 30 ] Macromolecular Complexes

Updated: (Oct 8, 2015) Rate Avg:

( no ratings )

MeSH:

http://ibiss.igbmc.fr/ - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 31 ] XIC

Updated: (Jun 4, 2002) Rate Avg:

( no ratings )

...text/html; charset=iso-8859-1 XICCOMPARATIVE SEQUENCE ANALYSIS OF THE X-INACTIVATION CENTRE REGION IN...

MeSH:

http://pbil.univ-lyon1.fr/datasets/Xix2002/data.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine.

(Jun, 2002)

Close

[ 32 ] 1

Updated: (May 29, 2006) Rate Avg:

( no ratings )

...1. What is LocRepeat? LocRepeat is a sequence analysis tools for finding regions of pseudo-periodic...

MeSH:

http://www.cs.cityu.edu.hk/~lwang/software/LocRepeat/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Finding the region of pseudo-periodic tandem repeats in biological sequences.

(2006)

Close

[ 33 ] LIMS for Identification of Mutations by Sequencing and Tilling

Updated: (May 4, 2007) Rate Avg:

( no ratings )

...includes steps for amplicon selection, primer design, sequence analysis, and annotation of mutations...

MeSH:

http://limstill.niob.knaw.nl/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Efficient target-selected mutagenesis in Caenorhabditis elegans: toward a knockout for every gene.

(May, 2007)

Close

[ 34 ] GeneTIER

Updated: (Aug 8, 2015) Rate Avg:

( no ratings )

...electropherogram analysisNext Generation SequencingPrograms for next generation sequence analysis.Other softwarePrograms for performing miscellaneous data manipulation

MeSH:

http://dna.leeds.ac.uk/GeneTIER/ - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 35 ] Recall

Updated: (May 18, 2012) Rate Avg:

( no ratings )

...ascii RecallRECall (beta v3.02) - Web based sequence analysis Login:Password: If you do not...

MeSH:

http://pssm.cfenet.ubc.ca/account/login - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Automating HIV Drug Resistance Genotyping with RECall, a Freely Accessible Sequence Analysis Tool.

(Jun, 2012)

Close

[ 36 ] InterPro Biomart < InterPro < EMBL-EBI

Updated: (Jul 25, 2011) Rate Avg:

( no ratings )

...properly (Click here to enable JavaScript). InterProProtein sequence analysis & classification Examples: IPR020405, kinase, P51587, PF02932, GO...

MeSH:

http://www.ebi.ac.uk/interpro/biomart/martview - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
The InterPro BioMart: federated query and web service access to the InterPro Resource.

(2011)

Close

[ 37 ] Carnation DB

Updated: (Jun 18, 2014) Rate Avg:

( no ratings )

...S, Kishida Y, Kohara M, Tabata S Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus...

MeSH:

http://carnation.kazusa.or.jp/ - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 38 ] SNP structure,function,disease:

Updated: (Apr 14, 2006) Rate Avg:

( no ratings )

...non-synonymous SNPs based on structure and sequence analysis. News2008-10-29 dbSNP build 128...

MeSH:

http://www.snps3d.org/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
SNPs3D: candidate gene and SNP selection for association studies.

(Mar 22, 2006)

Close

[ 39 ] Introduction - MEME Suite

Updated: (May 7, 2016) Rate Avg:

( no ratings )

...finger nuclease systems. The MEME SuiteMotif-based sequence analysis toolsMEMEMultiple Em for Motif ElicitationCentriMoLocal Motif Enrichment...

MeSH:

http://meme-suite.org/ - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 40 ] Help for Complexity program

Updated: (Jun 24, 2004) Rate Avg:

( no ratings )

...charset=us-ascii Help for Complexity programLowComplexity: Sequence analysis software Please select one: Main site...

MeSH:

http://wwwmgs.bionet.nsc.ru/mgs/programs/low_complexity/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Complexity: an internet resource for analysis of DNA sequence complexity.

(Jul 1, 2004)

Close

[ 41 ] MotifLab - Regulatory Sequence Analysis Workbench

Updated: (Jan 25, 2013) Rate Avg:

( no ratings )

...text/html; charset=us-ascii MotifLab - Regulatory Sequence Analysis WorkbenchHomeNewsDownloadScreenshotsDocumentationUser ManualVideo TutorialsPublicationsConference PresentationsBioRegSIG 20114th StatSeq Workshop...

MeSH:

http://tare.medisin.ntnu.no/motiflab/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis.

(2013)

Close

[ 42 ] LOESS correction for length variation in gene set-based genomic sequence analysis

Updated: (May 22, 2012) Rate Avg:

( no ratings )

...length variation in gene set-based genomic sequence analysis Anton Aboukhalil1,2 and Martha L. Bulyk2...

MeSH:

http://thebrain.bwh.harvard.edu/LM_LOESS/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
LOESS correction for length variation in gene set-based genomic sequence analysis.

(Jun 1, 2012)

Close

[ 43 ] CIGD (Cancer Related Immunological Gene Database)

Updated: (Aug 11, 2010) Rate Avg:

( no ratings )

...Moreover, the CIG-DB is equipped with sequence analysis tools based on BLAST and CLUSTALW, which...

MeSH:

http://www.scchr-cigdb.jp/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
CIG-DB: the database for human or mouse immunoglobulin and T cell receptor genes available for cancer studies.

(2010)

Close

[ 44 ] Sequencing Home

Updated: (Nov 25, 2008) Rate Avg:

( no ratings )

...used and processed by the Next Generation Sequencing analysis tools available through BioHPC. The functions...

MeSH:

http://cbsuapps.tc.cornell.edu/Sequencing/seqmain.aspx - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
A flexible forward simulator for populations subject to selection and demography.

(Dec 1, 2008)

Close

[ 45 ] REBASE FTP Site

Updated: (Jan 4, 2007) Rate Avg:

( no ratings )

...we are prepared to support each major sequence analysis package. How to: ftp ftp.neb.com...

MeSH:

http://rebase.neb.com/rebase/rebase.ftp.html - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
REBASE--enzymes and genes for DNA restriction and modification.

(Jan, 2007)

Close

[ 46 ] Lobster protein sequence analysis

Updated: (May 24, 2004) Rate Avg:

( no ratings )

...ascii Lobster protein sequence analysisLobster home pageProtein sequence analysis softwareContact:If you are interested in multiple...

MeSH:

http://www.drive5.com/lobster/ - PubMed:2 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
COACH: profile-profile alignment of protein families using hidden Markov models.

(May 22, 2004)
SATCHMO: sequence alignment and tree construction using hidden Markov models.

(Jul 22, 2003)

Close

[ 47 ] bladder's index

Updated: (Jul 8, 2002) Rate Avg:

( no ratings )

...791 sequences that are obtained by nucleotide sequence analysis of cDNA clones randomly isolated from six...

MeSH:

http://bladder.nhri.org.tw/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
Establishment of a mini-gene expression database for bladder tumor.

(Feb, 2002)

Close

[ 48 ] BTSS finder

Updated: (Oct 3, 2016) Rate Avg:

( no ratings )

...an attractive problem in the field of sequence analysis. In a bacterial genome, the transcription start...

MeSH:

http://www.cbrc.kaust.edu.sa/btssfinder/ - PubMed:0 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help

Close

[ 49 ] A Basic Analysis Toolkit for Biological Sequences

Updated: (Dec 19, 2007) Rate Avg:

( no ratings )

...that can be used to run basic sequence analysis tasks. Routines for global alignment (LCS from...

MeSH:

http://www.math.unipa.it/~raffaele/BATS/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
A basic analysis toolkit for biological sequences.

(2007)

Close

[ 50 ] GNV-1 HOME

Updated: (Aug 9, 2007) Rate Avg:

( no ratings )

...resources. These resources are of various types: Sequence analysis Gene prediction Signal predicition (transcription regulatory elements...

MeSH:

http://genome.crg.es/webservices/ - PubMed:1 - Show details ... - Permalink

Pages linking to this site found by ... Help
Google Yahoo
Papers citing this site found by ... Help
BioMed Central Scirus HighWire Press Google Scholar

PubMed entry(s) Help
BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations.

(Jul 15, 2007)

Close