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[ 1 ] BIG Data Center  
Updated: (Nov 30, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Pangenome Genome-organization-framework AssistedAssembly Pipeline (GAAP)Sequence Analysis Composition AnalysisToolkit (CAT)KaKs_CalculatorParallel Alignment & back...
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[ 2 ] BTSS finder  
Updated: (Oct 3, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...an attractive problem in the field of sequence analysis. In a bacterial genome, the transcription start...
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[ 3 ] CCB Software  
Updated: (Aug 26, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...with an accuracy of 99.99%.Other sequence analysis toolsBRCA gene testing a computational screening test...of links (now very old) to external sequence analysis programs. The Center for Computational Biology at...
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[ 4 ] Regulatory Sequence Analysis Tools (RSAT)  
Updated: (Aug 25, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...es/rsat/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools (RSAT) Your browser cannot handle frames. You can access rsa tools by connecting the no frames version. http://floresta.eead.csic.es/rsat/toc.html text/html; charset=us-ascii Regulatory Sequence Analysis Tools menuRSATNeAT New items > view all toolsGenomes and...
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[ 5 ] Gall-ID | Welcome  
Updated: (Aug 22, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...bacterial isolates from plant galls. Multi-locus sequence analysis (MLSA) data for Agrobacterium and/or Rhodocccus...
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[ 6 ] Introduction - MEME Suite  
Updated: (May 7, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...finger nuclease systems. The MEME SuiteMotif-based sequence analysis toolsMEMEMultiple Em for Motif ElicitationCentriMoLocal Motif Enrichment...
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[ 7 ] Sequence Analysis - Universität Ulm  
Updated: (Feb 6, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...research/seqana/ text/html; charset=utf-8 Sequence Analysis - Universität UlmInstitut für Theoretische Informatik...Theoretische Informatik I Proseminar Graphalgorithmen ForschungForschung EDACC Sequence Analysis SAT Solving Dichte Packung von Garnrollen auf...Henning Wunderlich SonstigesSonstiges Startseite Adresse Impressum EN Sequence Analysis Space-efficient Parallel Construction of Succinct Representations...
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[ 8 ] AlzBase  
Updated: (Jan 7, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Pangenome Genome-organization-framework AssistedAssembly Pipeline (GAAP)Sequence Analysis Composition AnalysisToolkit (CAT)KaKs_CalculatorParallel Alignment & back...
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[ 9 ] Macromolecular Complexes  
Updated: (Oct 8, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii Macromolecular Complexes Structure-sequence analysis of macromolecular complexes HomeDocumentationExample: S7p © 2013...
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[ 10 ] Welcome to the Immcantation Portal! — Immcantation documentation  
Updated: (Oct 8, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Practical guidelines for B-cell receptor repertoire sequencing analysis. Genome Med 2015; 7:121. doi: 10...
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[ 11 ] IMSEQ - IMmunogenetic SEQuence Analysis  
Updated: (Sep 11, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...utf-8 IMSEQ - IMmunogenetic SEQuence AnalysisIMSEQ - IMmunogenetic SEQuence Analysis AboutIMSEQ is a fast, PCR and sequencing...fast and error aware approach to immunogenetic sequence analysis. Bioinformatics. 2015;31(18):2963–71...
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[ 12 ] GeneTIER  
Updated: (Aug 8, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...electropherogram analysisNext Generation SequencingPrograms for next generation sequence analysis.Other softwarePrograms for performing miscellaneous data manipulation
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[ 13 ] SHIFTASA: Prediction of fractional ASA from Backbone Chemical Shifts and Sequence.  
Updated: (Jul 7, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...learning with the added benefits of advanced sequence analysis to accurately estimate fASA via chemical shift...
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[ 14 ] Regulatory Sequence Analysis Tools - Main portal  
Updated: (Jul 3, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
25904632 http://www.rsat.eu/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools - Main portalClick herehttp://pedagogix-tagc.univ-mrs.fr/rsat/RSAT_portal.html text/html; charset=us-ascii Regulatory Sequence Analysis ToolsRegulatory Sequence Analysis Tools Welcome to Regulatory Sequence Analysis Tools (RSAT). This web site provides a series of modular computer programs specifically designed for...
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RSAT 2015: Regulatory Sequence Analysis Tools.   Paper Page   (Jul 1, 2015)  
[ 15 ] Hunt Lab  
Updated: (Jun 20, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii Electron Transfer DissociationPeptide Sequence Analysis by ETD Mass Spectrometry Welcome to Professor Donald Hunt's tutorial on peptide sequence analysis by electron transfer dissociation (ETD) mass spectrometry...also be of interest: Peptide and Protein Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry, J.E....
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[ 16 ] Whiteboard main page  
Updated: (Jun 15, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...from: Yang H et al. Deep mRNA Sequencing Analysis to Capture the Transcriptome Landscape of Zebrafish...
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[ 17 ] Bradyrhizobium MLSA  
Updated: (Jun 4, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...few species have been delineated. The multilocus sequence analysis (MLSA) methodology, which includes analysis of housekeeping...
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[ 18 ] StatAlign – Home  
Updated: (Apr 18, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...text/html; charset=us-ascii StatAlign – HomeMultiple sequence analysis in the presence alignment uncertainty, using directed...
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[ 19 ] fastaptamer.html  
Updated: (Mar 4, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections." Molecular Therapy — Nucleic Acids. 2015. 4, e230; DOI: 10.1038/mtna.2015.4FASTAptamer is an easy-to-use and universally compatible toolkit designed for bench scientists to address the primary sequence analysis needs from high-throughput sequencing of combinatorial...
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[ 20 ] A Visualization-aided Variant Annotation Tool  
Updated: (Feb 5, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MiSeq, providing a complete solution for targeted sequencing analysis. Vanno can process at least 100 samples...
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[ 21 ] AtGenExpress JPN  
Updated: (Jan 22, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...data focusing on exon combinations from RNA sequencing analysis under nutient deficiencies. Contents...Data contributed...
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[ 22 ] Tree shrew Database  
Updated: (Nov 21, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...in the database to facilitate automatic gene sequence analysis. It is our hope that the Treeshrew...
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[ 23 ] Bioinformatics, University of Wuerzburg  
Updated: (Aug 15, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...data can be acquired from several different sequence analysis programs in flexible formats. Automatic dot-plot...data from PhosphoSite and complemented by bioinformatical sequence analysis for site-specific kinase predictions. The integration...Würzburg, Am Hubland,Würzburg, Germany. BACKGROUND: In sequence analysis the multiple alignment builds the fundament of...
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[ 24 ] Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical Wiki  
Updated: (Aug 12, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline text/html; charset=utf-8 Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical WikiWhole Exome Sequencing Analysis PipelineFrom Mood Disorders Analytical Wiki Jump to: navigation, searchWhole Exome Sequencing Analysis Pipeline The pipeline contains the following steps...org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline&oldid=1666" Category: NGS ExomeNavigation menuPersonal...
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[ 25 ] Carnation DB  
Updated: (Jun 18, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...S, Kishida Y, Kohara M, Tabata S Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus...
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[ 26 ] Systems Biology and Bioinformatics | King Mongkut's University of Technology Thonburi  
Updated: (Nov 15, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...journal clubTITLE: Bio-Database in Melanoma Exome sequencing Analysis. DATE: Tuesday,June 23,2015 1.30...
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[ 27 ] gobics.de: Software  
Updated: (Oct 30, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...alignments (Bielefeld) AGenDA - Gene prediction by comparative sequence analysis (Bielefeld...
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Multiple Sequence Alignment with DIALIGN.   Paper Page   (2014)  
[ 28 ] Home - NGS++  
Updated: (Jul 17, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...not NGS++?NGS++ is not specialized in sequence analysis. If you are looking to work with...
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[ 29 ] inmembrane  
Updated: (May 31, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...using web services and/or locally installed sequence analysis packages. inmembrane runs on Linux, OS X...You want to make your own protein sequence analysis work-flow, and would like to use...pypi/pip HMMER: this is the only sequence analysis software that is required to be locally...
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[ 30 ] EDAM  
Updated: (May 16, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...about non-positional sequence features, typically a report on general molecular sequence properties derived from sequence analysis." [http://edamontology.org] namespace: data is_a: EDAM_data:2955 ! Sequence report [Term] id: EDAM...namespace: data is_a: EDAM_data:3031 ! Core data relationship: has_topic EDAM_topic:0080 ! Sequence analysis [Term] id: EDAM_data:2046 name: Sequence record lite (nucleic acid) subset: bioinformatics subset: data...
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[ 31 ] MotifLab - Regulatory Sequence Analysis Workbench  
Updated: (Jan 25, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...text/html; charset=us-ascii MotifLab - Regulatory Sequence Analysis WorkbenchHomeNewsDownloadScreenshotsDocumentationUser ManualVideo TutorialsPublicationsConference PresentationsBioRegSIG 20114th StatSeq Workshop...
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[ 32 ] LOESS correction for length variation in gene set-based genomic sequence analysis  
Updated: (May 22, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...length variation in gene set-based genomic sequence analysis Anton Aboukhalil1,2 and Martha L. Bulyk2...
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[ 33 ] Recall  
Updated: (May 18, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...ascii RecallRECall (beta v3.02) - Web based sequence analysis Login:Password:  If you do not...
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[ 34 ] PIntron  
Updated: (Apr 27, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Assembly Algorithms for omics dataCombinatorial Structures for Sequence Analysis in BioinformaticsComputability in Europe 2013SoftwarePIntronLight String GraphHapColreHCstarHeu...
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[ 35 ] Home Page of TumorHoPe a Database of Tumor Homing Peptides  
Updated: (Apr 23, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...and payloads used have also been incorporated. Sequence analysis of peptides: We have computed amino acid...
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TumorHoPe: A Database of Tumor Homing Peptides.   Paper Page   (2012)  
[ 36 ] Home - Translational Pediatrics  
Updated: (Jan 31, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Sankaran, Chandima Karunanayake, Alan M RosenbergCloning and sequence analysis of SLC25A13 transcripts in human amniocytesZhan-Hui...Majaesic, Christopher Skappak, Adrian B. JonesCloning and sequence analysis of SLC25A13 transcripts in human amniocytesZhan-Hui...
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[ 37 ] The Platelet Web - Systems Biology Workbench  
Updated: (Jan 20, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...data from PhosphoSite and complemented by bioinformatical sequence analysis for site-specific kinase predictions. The integration...
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[ 38 ] WebMGA | Home  
Updated: (Sep 29, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...a Customizable Web Server for Fast Metagenomic Sequence Analysis", BMC Genomics 2011, 12:444...
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[ 39 ] InterPro Biomart < InterPro < EMBL-EBI  
Updated: (Jul 25, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...properly (Click here to enable JavaScript). InterProProtein sequence analysis & classification Examples: IPR020405, kinase, P51587, PF02932, GO...
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[ 40 ] Taxonomy of Stenotrophomonas and related bacteria  
Updated: (Jul 8, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...establish an online electronic taxonomy. The Multilocus Sequence Analysis (MLSA) is an alternative to these limitations...
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[ 41 ] RPs [PIR - Protein Information Resource]  
Updated: (May 10, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...stable, scalable and unbiased proteome set for sequence analysis and functional annotationRelease 2017_04, April 12...stable, scalable and unbiased proteome set for sequence analysis and functional annotation.PLoS One. 2011 Apr...
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[ 42 ] miRNAKey :: A software for the analysis of microRNA Deep Sequencing data  
Updated: (Oct 8, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Shomron. miRNAkey: a software for microRNA Deep Sequencing analysis. Bioinformatics 2010; doi: 10.1093/bioinformatics/btq493...
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miRNAkey: a software for microRNA deep sequencing analysis.   Paper Page   (Oct 15, 2010)  
[ 43 ] USEARCH  
Updated: (Sep 24, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...throughput search and clusteringUSEARCH is a unique sequence analysis tool with thousands of users world-wide...
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Search and clustering orders of magnitude faster than BLAST.   Paper Page   (Oct 1, 2010)  
[ 44 ] CircuitsDB  
Updated: (Sep 10, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...and mouse genomes, based on a bioinformatic sequence-analysis work.In particular, this web-site is...These circuits were assembled throught a bioinformatic sequence-analysis pipeline, applied to the human and mouse...
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[ 45 ] IDA@SMU: Intelligent Data Analysis Lab - Southern Methodist University  
Updated: (Sep 8, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Genomics (QuasiAlign)Streams (TRACDS)recommenderlabarulesseriationAffiliationEMIS, CSELyle, SMUEMM Sequence Analysis (EMMSA)The Extensible Markov Model (EMM, see...Dunham, M. HahslerDeveloped SoftwareSlide Presentation: Next Generation Sequence Analysis with EMM.EMMSA Researcher Guide.JAR, Source and Data: Prokaryotic Builder/Classifier/DifferentiatorR programs for preprocessing sequences for EMMSA tools.PublicationsR.M. Kotamarti. "Quasi alignment methods for molecular sequence analysis," PhD Thesis, SMU, 2010. R.M. Kotamarti, M....
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[ 46 ] CIGD (Cancer Related Immunological Gene Database)  
Updated: (Aug 11, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Moreover, the CIG-DB is equipped with sequence analysis tools based on BLAST and CLUSTALW, which...
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[ 47 ] SBSPKS  
Updated: (Jun 25, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...     Structure Based Sequence Analysis of Polyketide Synthaseshttp://202.54.249...and Mohanty, D. (2010) SBSPKS: Structure based sequence analysis of polyketide synthases.   ...
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[ 48 ] magicviewer  
Updated: (Jun 25, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...for database submission Factor 5 speedup of sequence analysis while at the same time achieving better...
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[ 49 ] ergatis  
Updated: (Jun 9, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...CloVR is a virtual applicance for automated sequence analysis that supports cloud computing platforms, including Amazon...
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[ 50 ] QSVanalyser - information  
Updated: (Dec 7, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...electropherogram analysisNext Generation SequencingPrograms for next generation sequence analysis.Other softwarePrograms for performing miscellaneous data manipulation
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