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[ 1 ] Regulatory Sequence Analysis Tools - Main portal  
Updated: (Jul 3, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
25904632 RSAT 2015: Regulatory Sequence Analysis Tools. RSAT (Regulatory Sequence Analysis Tools) is a modular software suite for the analysis of cis-regulatory elements in genome...Chollier AU:J van Helden http://www.rsat.eu/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools - Main portalClick herehttp://pedagogix-tagc.univ-mrs.fr/rsat/RSAT_portal.html text/html; charset=us-ascii Regulatory Sequence Analysis ToolsRegulatory Sequence Analysis Tools Welcome to Regulatory Sequence Analysis Tools (RSAT). This web site provides a series of modular computer programs specifically designed for...
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RSAT 2015: Regulatory Sequence Analysis Tools.   Paper Page   (Jul 1, 2015)  
[ 2 ] About GATA  
Updated: (Jan 31, 2005)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
15655071 GATA: a graphic alignment tool for comparative sequence analysis. Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved sequence elements...stand alone, platform independent, graphic alignment tool for comparative sequence analysis (GATA http://gata.sourceforge.net/). GATA uses the NCBI...
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[ 3 ] Sequence Analysis with Distributed Resources - Homepage  
Updated: (Apr 24, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...and one on the advanced level: (i) SADR: Sequence Analysis with Distributed Resources (http://bibiserv.techfak.uni-bielefeld...bielefeld.de/sadr/ text/html; charset=us-ascii Sequence Analysis with Distributed Resources - Homepage  A Web-based practical course on sequence analysis using resources from all over the world. Sequence Analysis With Distributed ResourcesToday, researchers in molecular biology often...
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[ 4 ] Regulatory Sequence Analysis Tools (RSAT)  
Updated: (Aug 25, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Plant Genomes. The plant-dedicated mirror of the Regulatory Sequence Analysis Tools (RSAT, http://plants.rsat.eu ) offers specialized options...csic.es/rsat/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools (RSAT) Your browser cannot handle frames. You can access rsa tools by connecting the no frames version. http://floresta.eead.csic.es/rsat/toc.html text/html; charset=us-ascii Regulatory Sequence Analysis Tools menuRSATNeAT New items > view all toolsGenomes and genessupported...
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[ 5 ] IBCP IT Status  
Updated: (Aug 21, 2006)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...classification / genetics / ultrastructure MeSH:Sequence Alignment / methods * MeSH:Sequence Analysis, Protein / methods * MeSH:Software * MeSH:User-Computer Interface * AU:N Garnier AU:A Friedrich AU:R Bolze AU:E Bettler AU:L Moulinier AU:C Geourjon AU:JD Thompson AU:G Deleage AU:O Poch ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities. Programs devoted to...
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[ 6 ] Recall  
Updated: (May 18, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...resistance genotyping with RECall, a freely accessible sequence analysis tool. Genotypic HIV drug resistance testing is routinely used to guide clinical decisions. While genotyping methods can be standardized, a slow, labor-intensive, and subjective manual sequence interpretation step is required. We therefore performed external validation of our custom software RECall, a fully automated sequence analysis pipeline. HIV-1 drug resistance genotyping was...
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[ 7 ] Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical Wiki  
Updated: (Aug 12, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MeSH:Humans MeSH:Polymorphism, Single Nucleotide MeSH:Sequence Analysis, DNA * MeSH:Software * AU:M Pirooznia AU:M Kramer AU:J Parla AU:FS Goes AU:JB Potash AU:WR McCombie AU:PP Zandi http://metamoodics.org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline text/html; charset=utf-8 Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical WikiWhole Exome Sequencing...
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[ 8 ] Genomic Paris Centre - IBENS  
Updated: (May 22, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MeSH:High-Throughput Nucleotide Sequencing / methods * MeSH:Mice MeSH:Sequence Analysis, RNA / methods * MeSH:Software AU:L Jourdren AU:M...ens.fr/teolenn/. MeSH:Genome, Fungal MeSH:Oligonucleotide Array Sequence Analysis / methods * MeSH:Oligonucleotide Probes / chemistry * MeSH:Software * MeSH:Trichoderma...MeSH:Linear Models MeSH:Models, Genetic * MeSH:Oligonucleotide Array Sequence Analysis / methods * MeSH:Software * MeSH:User-Computer Interface AU:J...
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[ 9 ] eMLSA  
Updated: (Feb 6, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...to define and circumscribe bacterial species as sequence clusters. The advantage of this approach (multilocus sequence analysis; MLSA) is that, for any group of related species, a strain database can be produced...of multiple core (house-keeping) genes to assess clustering patterns, and has been called multilocus sequence analysis (MLSA; Gevers et al., 2005; Hanage et al., 2006), or multilocus sequence phylogenetic analysis (Nørskov...
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Assigning strains to bacterial species via the internet.   Paper Page   (Jan 26, 2009)  
[ 10 ] Comparison of Wheat and Rice Genomes  
Updated: (Aug 6, 2003)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
12902377 Comparative DNA sequence analysis of wheat and rice genomes. The use...homologous wheat genome locations based on comparative sequence analysis revealed numerous chromosomal rearrangements that will significantly...MeSH:Poaceae / genetics MeSH:Sequence Alignment MeSH:Sequence Analysis, DNA / methods * MeSH:Sequence Homology, Nucleic Acid...La Rota, et al. 2003. Comparative DNA Sequence Analysis of Wheat and Rice Genomes. Genome Research 13:1818-1827. See also the following reference for updated information : M La Rota, ME Sorrells. 2004. Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity...
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Comparative DNA sequence analysis of wheat and rice genomes.   Paper Page   (Aug, 2003)  
[ 11 ] Genomics of sporulation  
Updated: (Aug 11, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
18562273 Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation'...of their phylogenetic distribution, and performed detailed sequence analysis and, where possible, structural modeling aimed at estimating their potential functions. Here we report the results of sequence analysis of Bacillus subtilis spore germination protein GerM...Data MeSH:Phylogeny MeSH:Protein Conformation MeSH:Sequence Analysis, Protein / methods * AU:DJ Rigden AU:MY...
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[ 12 ] FamilyJewels: tools for comparative sequence analysis  
Updated: (Apr 28, 2005)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Cartwheel: tools for interspecific sequence comparison. Comparative sequence analysis is an effective and increasingly common way...Sequences, Nucleic Acid MeSH:Sequence Alignment MeSH:Sequence Analysis, DNA / methods * MeSH:Software * MeSH:User-Computer Interface AU:CT Brown AU:Y Xie AU:EH Davidson AU:RA Cameron http://family.caltech.edu/ text/html; charset=us-ascii FamilyJewels: tools for comparative sequence analysis FamilyJewelsTools for Comparative Sequence Analysis This is the home page for the...
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[ 13 ] www.phyloware  
Updated: (Nov 17, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MeSH:Molecular Sequence Data MeSH:Oligonucleotide Array Sequence Analysis MeSH:Sequence Analysis, DNA / methods * MeSH:Software * AU:DN Frank http://www.phyloware.com/Phyloware/Home.html text/html; charset=utf-8 Home    XplorSeqMac OSX software for sequence analysis***Note:  The NCBI client provided by...new release of XplorSeq. XplorSeq ToolKitToolkit of sequence analysis software.  Includes C and C++ libraries...
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[ 14 ] Welcome | Bioinformatics and Genomics Department at CIPF  
Updated: (Mar 30, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MeSH:Molecular Sequence Annotation * MeSH:Oligonucleotide Array Sequence Analysis MeSH:Sequence Analysis, Protein MeSH:Software * MeSH:Vocabulary, Controlled AU...Transcription Factor-3 / genetics * MeSH:Oligonucleotide Array Sequence Analysis MeSH:Organogenesis / genetics MeSH:Repressor Proteins MeSH:Response Elements * MeSH:Sequence Analysis, DNA * MeSH:Sex-Determining Region Y Protein...MeSH:Nucleic Acid Hybridization * MeSH:Oligonucleotide Array Sequence Analysis / methods * MeSH:Programming Languages MeSH:Software * MeSH...
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[ 15 ] LOESS correction for length variation in gene set-based genomic sequence analysis  
Updated: (May 22, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...length variation in gene set-based genomic sequence analysis. Sequence analysis algorithms are often applied to sets of...genetics * / metabolism * MeSH:Protein Structure, Tertiary MeSH:Sequence Analysis, DNA MeSH:Software * MeSH:Transcription Factors / chemistry...length variation in gene set-based genomic sequence analysis Anton Aboukhalil1,2 and Martha L. Bulyk2...
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[ 16 ] Hunt Lab  
Updated: (Jun 20, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
25821049 Peptide Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry: A...html; charset=us-ascii Electron Transfer DissociationPeptide Sequence Analysis by ETD Mass Spectrometry Welcome to Professor Donald Hunt's tutorial on peptide sequence analysis by electron transfer dissociation (ETD) mass spectrometry...also be of interest: Peptide and Protein Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry, J.E....
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[ 17 ] OMG Document -- formal/99-10-07 (CORBA 2.3.1 - minor revision - supersedes formal/98-12-01)  
Updated: (Oct 17, 2000)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
10958633 Alfresco--a workbench for comparative genomic sequence analysis. Comparative analysis of genomic sequences provides a...which is necessary for large-scale genomic sequence analysis. Using Java, we have developed a new visualization tool that allows effective comparative genome sequence analysis. The program handles a pair of sequences...Humans MeSH:Mice MeSH:Sequence Alignment MeSH:Sequence Analysis, DNA / methods * MeSH:Sequence Homology, Nucleic Acid...
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[ 18 ] Sirius Prediction System Builder  
Updated: (Dec 16, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Builder (PSB), a new computational tool for sequence analysis, classification and searching. Sirius PSB has four...PSB has also introduced two novelties in sequence analysis. Firstly, genetic algorithm is used to identify...Molecular Sequence Data MeSH:Proteins / chemistry * MeSH:Sequence Analysis, Protein / methods * MeSH:Software * AU:CH Koh...or no computing knowledge to carry out sequence analysis using computational methods with ease and speed...
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[ 19 ] Pse-in-One  
Updated: (Jul 3, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...computational proteomics, genomics, as well as biological sequence analysis. Moreover, to maximize users' convenience, its stand-alone version can also be downloaded from http://bioinformatics.hitsz.edu.cn/Pse-in-One/download/, and directly run on Windows, Linux, Unix and Mac OS. MeSH:Internet MeSH:Machine Learning MeSH:Sequence Analysis, DNA / methods * MeSH:Sequence Analysis, Protein / methods * MeSH:Sequence Analysis, RNA / methods...
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[ 20 ] File Exchange - MATLAB Central  
Updated: (Dec 13, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
22011106 Mitochondrial genome sequence analysis: a custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy. Mitochondrial genome sequence analysis is critical to the diagnostic evaluation of...by at least one other mitochondrial DNA sequence analysis method, including Sanger sequencing, denaturing HPLC-based...MeSH:Mitochondria / chemistry / genetics * MeSH:Mutation MeSH:Sequence Analysis, DNA / methods AU:HM Xie AU:JC...
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[ 21 ] BioRuby  
Updated: (Oct 8, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Ruby programming language. BioRuby has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis...MEDLINE MeSH:Phylogeny MeSH:Programming Languages * MeSH:Sequence Analysis, Protein MeSH:Software * AU:N Goto AU:P Prins AU:M Nakao AU:R Bonnal AU:J Aerts AU:T Katayama [Introduction to the practical analysis of DNA microarray data]. MeSH:Computational Biology MeSH:Databases, Genetic * MeSH:Oligonucleotide Array Sequence Analysis * AU:H Bono AU:MC Nakao http...
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[ 22 ] Shrimp GPAT - Shrimp gene and protein annotation tool  
Updated: (Jul 11, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...and for in-silico functional annotation and sequence analysis. ShrimpGPAT currently holds quality-filtered, molecular sequences...of functions and for other aspects of sequence analysis. ShrimpGPAT is a new, free and easily accessed service for the shrimp research community that provides a comprehensive and up-to-date database of quality-filtered decapod gene and protein sequences together with putative functional prediction and sequence analysis tools. An important feature is its community...
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[ 23 ] Biological Language Modeling Toolkit  
Updated: (Feb 7, 2005)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
15693744 BLMT: statistical sequence analysis using N-grams. Statistical analysis of amino...the efficient calculation of such statistics. Most sequence analysis tools will disregard matches because of the...Interpretation, Statistical * MeSH:Sequence Alignment / methods * MeSH:Sequence Analysis / methods * MeSH:Software * MeSH:User-Computer Interface...Intelligence LNCS/LNAI 3864, 2006. "BLMT: Statistical sequence analysis using n-grams", Madhavi Ganapathiraju, Vijayalaxmi Manoharan...
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BLMT: statistical sequence analysis using N-grams.   Paper Page   (2004)  
[ 24 ] | Affymetrix CatalogNav  
Updated: (Jan 22, 2007)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Nucleotide / genetics * MeSH:Sequence Alignment / methods MeSH:Sequence Analysis, DNA / methods * MeSH:Software * MeSH:Statistics as...Acid Amplification Techniques * / methods MeSH:Oligonucleotide Array Sequence Analysis * / methods MeSH:Protein Isoforms / genetics MeSH:Transcription...MeSH:Humans MeSH:Mice MeSH:Oligonucleotide Array Sequence Analysis MeSH:Species Specificity AU:L Huminiecki AU...Genome, Human MeSH:Humans MeSH:Oligonucleotide Array Sequence Analysis MeSH:Pan troglodytes / genetics * MeSH:Species Specificity...
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[ 25 ] Oracle Technology Network for Java Developers | Oracle Technology Network | Oracle  
Updated: (Jun 20, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Hardison Alfresco--a workbench for comparative genomic sequence analysis. Comparative analysis of genomic sequences provides a...which is necessary for large-scale genomic sequence analysis. Using Java, we have developed a new visualization tool that allows effective comparative genome sequence analysis. The program handles a pair of sequences...Humans MeSH:Mice MeSH:Sequence Alignment MeSH:Sequence Analysis, DNA / methods * MeSH:Sequence Homology, Nucleic Acid...
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[ 26 ] IMSEQ - IMmunogenetic SEQuence Analysis  
Updated: (Sep 11, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...fast and error aware approach to immunogenetic sequence analysis. Recombined T- and B-cell receptor repertoires...C++ using the SeqAn library for efficient sequence analysis. It is freely available under the GPLv2...utf-8 IMSEQ - IMmunogenetic SEQuence AnalysisIMSEQ - IMmunogenetic SEQuence Analysis AboutIMSEQ is a fast, PCR and sequencing...fast and error aware approach to immunogenetic sequence analysis. Bioinformatics. 2015;31(18):2963–71...
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[ 27 ] Orbacus - Micro Focus  
Updated: (Oct 17, 2000)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
10958633 Alfresco--a workbench for comparative genomic sequence analysis. Comparative analysis of genomic sequences provides a...which is necessary for large-scale genomic sequence analysis. Using Java, we have developed a new visualization tool that allows effective comparative genome sequence analysis. The program handles a pair of sequences...Humans MeSH:Mice MeSH:Sequence Alignment MeSH:Sequence Analysis, DNA / methods * MeSH:Sequence Homology, Nucleic Acid...
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[ 28 ] IDA@SMU: Intelligent Data Analysis Lab - Southern Methodist University  
Updated: (Sep 8, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Genomics (QuasiAlign)Streams (TRACDS)recommenderlabarulesseriationAffiliationEMIS, CSELyle, SMUEMM Sequence Analysis (EMMSA)The Extensible Markov Model (EMM, see...Dunham, M. HahslerDeveloped SoftwareSlide Presentation: Next Generation Sequence Analysis with EMM.EMMSA Researcher Guide.JAR, Source and Data: Prokaryotic Builder/Classifier/DifferentiatorR programs for preprocessing sequences for EMMSA tools.PublicationsR.M. Kotamarti. "Quasi alignment methods for molecular sequence analysis," PhD Thesis, SMU, 2010. R.M. Kotamarti, M....
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[ 29 ] BiDaS  
Updated: (Jun 24, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MeSH:Proteins / chemistry * MeSH:RNA / chemistry * MeSH:Sequence Analysis / methods * MeSH:Sequence Analysis, DNA / methods MeSH:Sequence Analysis, Protein / methods MeSH:Sequence Analysis, RNA / methods MeSH:Software * AU:MD Paraskevopoulou...
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[ 30 ] Search Tools and Software | Sanger Institute  
Updated: (Jul 31, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MeSH:Caenorhabditis elegans / genetics MeSH:Genome * MeSH:Genomics / methods * MeSH:Humans MeSH:Models, Statistical MeSH:Sequence Analysis, DNA AU:M Hunt AU:T Kikuchi AU:M Sanders AU:C Newbold AU:M...DNA, Neoplasm / genetics * MeSH:Female MeSH:Genome, Human * MeSH:Humans MeSH:Mutagenesis * MeSH:Probability MeSH:Sequence Analysis, DNA / methods * MeSH:Software * AU:A Fischer AU:CJ Illingworth AU:PJ Campbell AU:V...
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REAPR: a universal tool for genome assembly evaluation.   Paper Page   (May 27, 2013)  
EMu: probabilistic inference of mutational processes and their localization in the cancer genome.   Paper Page   (Apr 29, 2013)  
optiCall: a robust genotype-calling algorithm for rare, low-frequency and common variants.   Paper Page   (Jun 15, 2012)  
MouseFinder: Candidate disease genes from mouse phenotype data.   Paper Page   (May, 2012)  
CCRaVAT and QuTie-enabling analysis of rare variants in large-scale case control and quantitative trait association studies.   Paper Page   (Oct 21, 2010)  
A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies.   Paper Page   (May 6, 2010)  
GLIDERS--a web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs.   Paper Page   (Oct 31, 2009)  
DNAPlotter: circular and linear interactive genome visualization.   Paper Page   (Jan 1, 2009)  
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.   Paper Page   (Dec 1, 2008)  
NestedMICA as an ab initio protein motif discovery tool.   Paper Page   (Jan 14, 2008)  
ProServer: a simple, extensible Perl DAS server.   Paper Page   (Jun 15, 2007)  
Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.   Paper Page   (Jun 15, 2007)  
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands.   Paper Page   (Sep 15, 2006)  
Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants.   Paper Page   (Aug, 2006)  
Visualizing profile-profile alignment: pairwise HMM logos.   Paper Page   (Jun 15, 2005)  
AnoEST: toward A. gambiae functional genomics.   Paper Page   (Jun, 2005)  
The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.   Paper Page   (May, 2005)  
iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.   Paper Page   (Feb 1, 2005)  
Rfam: annotating non-coding RNAs in complete genomes.   Paper Page   (Jan 1, 2005)  
Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags.   Paper Page   (Jan, 2005)  
Comparative analysis of apicomplexa and genomic diversity in eukaryotes.   Paper Page   (Sep, 2004)  
Improved techniques for the identification of pseudogenes.   Paper Page   (Aug 4, 2004)  
Complete MHC haplotype sequencing for common disease gene mapping.   Paper Page   (Jun, 2004)  
The genomic sequence and comparative analysis of the rat major histocompatibility complex.   Paper Page   (Apr, 2004)  
HMM Logos for visualization of protein families.   Paper Page   (Jan 21, 2004)  
Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution.   Paper Page   (Jun, 2003)  
Comparative gene prediction in human and mouse.   Paper Page   (Jan, 2003)  
Reevaluating human gene annotation: a second-generation analysis of chromosome 22.   Paper Page   (Jan, 2003)  
Signatures of domain shuffling in the human genome.   Paper Page   (Nov, 2002)  
Comparative ab initio prediction of gene structures using pair HMMs.   Paper Page   (Oct, 2002)  
GAZE: a generic framework for the integration of gene-prediction data by dynamic programming.   Paper Page   (Sep, 2002)  
Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs.   Paper Page   (May, 2002)  
A sequence-based integrated map of chromosome 22.   Paper Page   (Jul, 2001)  
Sequence and analysis of chromosome I of the amitochondriate intracellular parasite Encephalitozoon cuniculi (Microspora).   Paper Page   (Feb, 2001)  
Viral genome organizer: a system for analyzing complete viral genomes.   Paper Page   (Sep, 2000)  
MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.   Paper Page   (Apr, 2000)  
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs.   Paper Page   (Sep, 1999)  
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.   Paper Page   (Jan 1, 1999)  
Sequence assembly with CAFTOOLS.   Paper Page   (Mar, 1998)  
SPEM: a parser for EMBL style flat file database entries.   Paper Page   (1998)  
[ 31 ] JCVI: Research / Projects / TDB / Overview  
Updated: (Jun 23, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MeSH:Minisatellite Repeats / genetics * MeSH:Models, Genetic MeSH:Nonlinear Dynamics MeSH:Saccharomyces cerevisiae / genetics MeSH:Sequence Analysis, DNA * AU:M Legendre AU:N Pochet AU:T Pak AU:KJ Verstrepen Gene enrichment...5'-ACGT-3'). Fragments of 1-4 kb were purified and cloned, followed by sequence analysis of >2000 clones from 10 separate libraries. Organellar clones comprised approximately 10% of each library...
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Sequence-based estimation of minisatellite and microsatellite repeat variability.   Paper Page   (Dec, 2007)  
The function and expansion of the Patched- and Hedgehog-related homologs in C. elegans.   Paper Page   (Oct, 2005)  
Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries.   Paper Page   (Oct, 2005)  
Differential methylation of genes and repeats in land plants.   Paper Page   (Oct, 2005)  
Characterization of the maize endosperm transcriptome and its comparison to the rice genome.   Paper Page   (Oct, 2004)  
A genetic map of candidate genes and QTLs involved in tomato fruit size and composition.   Paper Page   (Aug, 2004)  
The small chromosomes of Trypanosoma brucei involved in antigenic variation are constructed around repetitive palindromes.   Paper Page   (Jun, 2004)  
A Plasmodium gene family encoding Maurer's cleft membrane proteins: structural properties and expression profiling.   Paper Page   (Jun, 2004)  
BAC resources for the rat genome project.   Paper Page   (Apr, 2004)  
1-Mb resolution array-based comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis.   Paper Page   (Jan, 2004)  
Hierarchical scaffolding with Bambus.   Paper Page   (Jan, 2004)  
Characterizing embryonic gene expression patterns in the mouse using nonredundant sequence-based selection.   Paper Page   (Dec, 2003)  
OrthoMCL: identification of ortholog groups for eukaryotic genomes.   Paper Page   (Sep, 2003)  
Comparative DNA sequence analysis of wheat and rice genomes.   Paper Page   (Aug, 2003)  
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.   Paper Page   (Jul, 2003)  
Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage.   Paper Page   (Jun, 2003)  
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.   Paper Page   (Feb, 2003)  
Centromere satellites from Arabidopsis populations: maintenance of conserved and variable domains.   Paper Page   (Feb, 2003)  
Soft rot erwiniae: from genes to genomes.   Paper Page   (Jan 1, 2003)  
Molecular approaches to the study of Coccidioides immitis.   Paper Page   (Oct, 2002)  
Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly.   Paper Page   (Aug, 2002)  
Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA).   Paper Page   (Mar, 2002)  
Association of multiple developmental defects and embryonic lethality with loss of microsomal NADPH-cytochrome P450 oxidoreductase.   Paper Page   (Feb 22, 2002)  
DIAN: a novel algorithm for genome ontological classification.   Paper Page   (Oct, 2001)  
Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential.   Paper Page   (Aug, 2001)  
Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle.   Paper Page   (Apr, 2001)  
A comprehensive BAC resource.   Paper Page   (Jan 1, 2001)  
Tools for the population genomics of the tubercle bacilli.   Paper Page   (Dec, 2000)  
Gene index analysis of the human genome estimates approximately 120,000 genes.   Paper Page   (Jun, 2000)  
Construction of a BAC contig map of chromosome 16q by two-dimensional overgo hybridization.   Paper Page   (May, 2000)  
Human BAC ends.   Paper Page   (Jan 1, 2000)  
Webwise: guide to the institute for genomic research web site.   Paper Page   (Oct, 1998)  
A comprehensive, high-resolution genomic transcript map of human skeletal muscle.   Paper Page   (Aug, 1998)  
[ 32 ] ONDEX Suite download | SourceForge.net  
Updated: (Jun 23, 2005)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
15972003 Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures. The structure of a closely integrated data warehouse is described that is designed to link different types and varying numbers of biological networks, sequence analysis methods and experimental results such as those...in a systematic way, close interoperability to sequence analysis methods can be achieved. This approach allows...
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[ 33 ] RPs [PIR - Protein Information Resource]  
Updated: (May 10, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...stable, scalable and unbiased proteome set for sequence analysis and functional annotation. The accelerating growth in...protein annotation and characterization. MeSH:Proteome * MeSH:Sequence Analysis, Protein * AU:C Chen AU:DA Natale...stable, scalable and unbiased proteome set for sequence analysis and functional annotationRelease 2017_01, January 18...stable, scalable and unbiased proteome set for sequence analysis and functional annotation.PLoS One. 2011 Apr...
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[ 34 ] SBSPKS  
Updated: (Jun 25, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
20444870 SBSPKS: structure based sequence analysis of polyketide synthases. Polyketide synthases (PKSs) catalyze...Molecular MeSH:Polyketide Synthases / chemistry * / metabolism MeSH:Sequence Analysis, Protein MeSH:Software * MeSH:Substrate Specificity AU...     Structure Based Sequence Analysis of Polyketide Synthaseshttp://202.54.249...and Mohanty, D. (2010) SBSPKS: Structure based sequence analysis of polyketide synthases.   ...
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[ 35 ] Site en travaux  
Updated: (Aug 17, 2000)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
10869021 MPSA: integrated system for multiple protein sequence analysis with client/server capabilities. MPSA is a stand-alone software intended to protein sequence analysis with a high integration level and Web...fr MeSH:Computing Methodologies MeSH:Internet * MeSH:Sequence Analysis, Protein / methods * MeSH:Software * AU:C Blanchet...
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[ 36 ] Panseq  
Updated: (Dec 5, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Nucleotide MeSH:Salmonella enterica / classification * / genetics * MeSH:Sequence Analysis, DNA / methods * AU:C Laing AU:A Villegas AU:EN Taboada AU:A Kropinski AU:JE Thomas AU:VP Gannon Pan-genome sequence analysis using Panseq: an online tool for the...we describe a new online pan-genome sequence analysis program, Panseq. Panseq was used to identify...
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[ 37 ] Intro to Omics Pipe  
Updated: (May 27, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...reproducible, open source and extensible next generation sequencing analysis. The goal of Omics Pipe is to democratize next-generation sequencing analysis by dramatically increasing the accessibility and reproducibility...MeSH:Humans MeSH:Reproducibility of Results MeSH:Sequence Analysis, RNA MeSH:Software * AU:KM Fisch AU...several best practice pipelines for next generation sequencing analysis. Additional pipelines can easily be created from...
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[ 38 ] Google Code Archive - Long-term storage for Google Code Project Hosting.  
Updated: (Mar 2, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
21364786 SeqCalc: A portable bioinformatics software for sequence analysis. Rapid genome sequencing enriched biological databases with...would assist the research personnel in computational sequence analysis and automated experimental calculations. Although several tools are available online for sequence analysis they serve only for one or two...
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[ 39 ] HieranoiDB  
Updated: (Oct 12, 2004)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...It is designed to visualize data from sequence analysis programs, allowing the user to view multiple sets of computationally generated analysis to assist the analysis process. SFS is used as the data exchange format. Sfixem is available for direct usage or download for local usage at http://sfixem.cgb.ki.se. A protein sequence analysis workbench using Sfixem is available at http...
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Sfixem--graphical sequence feature display in Java.   Paper Page   (Oct 12, 2004)  
[ 40 ] INCLUSive  
Updated: (Jun 25, 2003)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...and service registry for microarray and regulatory sequence analysis. INCLUSive is a suite of algorithms and...Profiling / methods * MeSH:Internet MeSH:Oligonucleotide Array Sequence Analysis / methods * MeSH:Registries MeSH:Regulatory Sequences, Nucleic Acid * MeSH:Sequence Analysis / methods MeSH:Software * MeSH:Systems Integration AU...and service registry for microarray and regulatory sequence analysis. Nucleic Acids Res., 31: 3468-3470...
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[ 41 ] www.biotools  
Updated: (Nov 16, 1999)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...and GeneTool: platform-independent tools for biological sequence analysis. Although we are unable to discuss all...in the rapidly changing world of biological sequence analysis. More complete descriptions of the programs, algorithms...Protein Structure, Secondary MeSH:Restriction Mapping MeSH:Sequence Analysis / methods * MeSH:Sequence Homology, Amino Acid AU...
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[ 42 ] PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features  
Updated: (Jun 24, 2004)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...predictprotein.org) is an Internet service for sequence analysis and the prediction of protein structure and...Proteins / chemistry * / physiology MeSH:Sequence Alignment MeSH:Sequence Analysis, Protein * MeSH:Software * MeSH:User-Computer Interface AU:B Rost AU:G Yachdav AU:J Liu https://www.predictprotein.org/ text/html; charset=utf-8 PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features Welcome...
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The PredictProtein server.   Paper Page   (Jul 1, 2004)  
[ 43 ] psipred : index  
Updated: (Mar 22, 2007)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Protein Conformation MeSH:Reproducibility of Results MeSH:Sequence Analysis, Protein / methods * AU:DT Jones The DISOPRED...analysis * / chemistry * MeSH:Sequence Alignment / methods * MeSH:Sequence Analysis, Protein / methods * AU:JJ Ward AU:LJ...ServerServer OverviewServer CitationHelp & TutorialsNewsHistorySoftware DownloadThe PSIPRED Protein Sequence Analysis WorkbenchThe PSIPRED Protein Sequence Analysis Workbench aggregates several UCL structure prediction methods...
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[ 44 ] miRNA sequence and expression database  
Updated: (Dec 23, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
21177657 mESAdb: microRNA expression and sequence analysis database. microRNA expression and sequence analysis database (http://konulab.fen.bilkent.edu.tr...MeSH:Mice MeSH:MicroRNAs / chemistry * / metabolism * MeSH:Sequence Analysis, RNA MeSH:Software MeSH:Systems Integration MeSH...
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mESAdb: microRNA expression and sequence analysis database.   Paper Page   (Jan, 2011)  
[ 45 ] EBI Search  
Updated: (Jul 3, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...free access to a range of mainstream sequence analysis applications. These include sequence similarity search services (https://www.ebi.ac.uk/Tools/sss/) such as BLAST, FASTA and PSI-Search, multiple sequence alignment tools (https://www.ebi.ac.uk/Tools/msa/) such as Clustal Omega, MAFFT and T-Coffee, and other sequence analysis tools (https://www.ebi.ac.uk/Tools...
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[ 46 ] Software  
Updated: (Dec 14, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Profiling / methods * MeSH:Genomics MeSH:Oligonucleotide Array Sequence Analysis / methods * MeSH:Sequence Analysis, DNA MeSH:Sequence Analysis, RNA AU:Z Wu AU:BD Jenkins...
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[ 47 ] PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features  
Updated: (Jul 3, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...features. PredictProtein is a meta-service for sequence analysis that has been predicting structural and functional...analysis / genetics / metabolism MeSH:Sequence Alignment MeSH:Sequence Analysis, Protein MeSH:Sequence Homology, Amino Acid MeSH...text/html; charset=utf-8 PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional FeaturesOPENHelp Tutorials...
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[ 48 ] sputnik  
Updated: (Jan 26, 2001)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...and mouse alpha-synuclein genes: comparative genomic sequence analysis and identification of a novel gene regulatory...conserved regions of biological importance through comparative sequence analysis. These efforts have yielded approximately 146 and...MeSH:Repetitive Sequences, Nucleic Acid / genetics MeSH:Sequence Analysis, DNA MeSH:Synucleins MeSH:alpha-Synuclein AU...
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[ 49 ] H-VDW.htm  
Updated: (Oct 10, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...RNA / chemistry * / metabolism MeSH:Regression Analysis MeSH:Sequence Analysis, DNA / methods MeSH:Sequence Analysis, Protein / methods MeSH:Sequence Analysis, RNA / methods MeSH:Structure-Activity Relationship MeSH...
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[ 50 ] Department of Computer Science, Columbia University | Not Found  
Updated: (May 25, 2006)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...MeSH:Molecular Chaperones / chemistry MeSH:Oligonucleotide Array Sequence Analysis / methods MeSH:Saccharomyces cerevisiae / metabolism AU:A...genetics * MeSH:Saccharomyces cerevisiae Proteins / physiology MeSH:Sequence Analysis, DNA / methods MeSH:Signal Transduction / genetics * MeSH...analysis / chemistry * MeSH:Sequence Alignment / methods * MeSH:Sequence Analysis, Protein / methods * MeSH:Sequence Homology, Amino Acid...MeSH:Neoplasms / classification / genetics * MeSH:Oligonucleotide Array Sequence Analysis / methods * MeSH:Pattern Recognition, Automated MeSH:Reproducibility of Results MeSH:Sensitivity and Specificity MeSH:Sequence Analysis, DNA / methods * MeSH:Yeasts / genetics * AU:J...
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