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[ 1 ] Regulatory Sequence Analysis Tools - Main portal  
Updated: (Jul 3, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
25904632 http://www.rsat.eu/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools - Main portalClick herehttp://pedagogix-tagc.univ-mrs.fr/rsat/RSAT_portal.html text/html; charset=us-ascii Regulatory Sequence Analysis ToolsRegulatory Sequence Analysis Tools Welcome to Regulatory Sequence Analysis Tools (RSAT). This web site provides a series of modular computer programs specifically designed for...
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RSAT 2015: Regulatory Sequence Analysis Tools.   Paper Page   (Jul 1, 2015)  
[ 2 ] Regulatory Sequence Analysis Tools (RSAT)  
Updated: (Aug 25, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...es/rsat/ text/html; charset=us-ascii Regulatory Sequence Analysis Tools (RSAT) Your browser cannot handle frames. You can access rsa tools by connecting the no frames version. http://floresta.eead.csic.es/rsat/toc.html text/html; charset=us-ascii Regulatory Sequence Analysis Tools menuRSATNeAT New items > view all toolsGenomes and...
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[ 3 ] Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical Wiki  
Updated: (Aug 12, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline text/html; charset=utf-8 Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical WikiWhole Exome Sequencing Analysis PipelineFrom Mood Disorders Analytical Wiki Jump to: navigation, searchWhole Exome Sequencing Analysis Pipeline The pipeline contains the following steps...org/wiki/index.php?title=Whole_Exome_Sequencing_Analysis_Pipeline&oldid=1666" Category: NGS ExomeNavigation menuPersonal...
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[ 4 ] eMLSA  
Updated: (Feb 6, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...of multiple core (house-keeping) genes to assess clustering patterns, and has been called multilocus sequence analysis (MLSA; Gevers et al., 2005; Hanage et al., 2006), or multilocus sequence phylogenetic analysis (Nørskov...relationships among similar species may be confounded by interspecies recombination. A more promising approach (multilocus sequence analysis, MLSA) is to concatenate the sequences of multiple house-keeping loci and to observe the...
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Assigning strains to bacterial species via the internet.   Paper Page   (Jan 26, 2009)  
[ 5 ] InterPro protein sequence analysis & classification < InterPro < EMBL-EBI  
Updated: (Jun 23, 2003)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...text/html; charset=utf-8 InterPro protein sequence analysis & classification ...properly (Click here to enable JavaScript). InterProProtein sequence analysis & classification Examples: IPR020405, kinase, P51587, PF02932, GO:0007165HomeSearchRelease notesDownloadAbout InterProHelpContactBy sequenceBy domain architectureTraining & tutorialsFAQsDocumentationInterPro: protein sequence analysis & classificationInterPro provides functional analysis of proteins by...2.4Mb) | All publicationsTools InterProScanInterProScan is a sequence analysis application (nucleotide and protein sequences) that combines...
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The comparative proteomics of ubiquitination in mouse.   Paper Page   (Jun, 2003)  
[ 6 ] IDA@SMU: Intelligent Data Analysis Lab - Southern Methodist University  
Updated: (Sep 8, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Genomics (QuasiAlign)Streams (TRACDS)recommenderlabarulesseriationAffiliationEMIS, CSELyle, SMUEMM Sequence Analysis (EMMSA)The Extensible Markov Model (EMM, see...Dunham, M. HahslerDeveloped SoftwareSlide Presentation: Next Generation Sequence Analysis with EMM.EMMSA Researcher Guide.JAR, Source and Data: Prokaryotic Builder/Classifier/DifferentiatorR programs for preprocessing sequences for EMMSA tools.PublicationsR.M. Kotamarti. "Quasi alignment methods for molecular sequence analysis," PhD Thesis, SMU, 2010. R.M. Kotamarti, M....
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[ 7 ] FamilyJewels: tools for comparative sequence analysis  
Updated: (Apr 28, 2005)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...charset=us-ascii FamilyJewels: tools for comparative sequence analysis FamilyJewelsTools for Comparative Sequence Analysis This is the home page for the...start with the introduction to doing comparative sequence analysis with FamilyRelations II. If you are interested...Brown, as part of his tools for sequence analysis. Related Projects:SeqComp is the program originally...
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[ 8 ] Hunt Lab  
Updated: (Jun 20, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii Electron Transfer DissociationPeptide Sequence Analysis by ETD Mass Spectrometry Welcome to Professor Donald Hunt's tutorial on peptide sequence analysis by electron transfer dissociation (ETD) mass spectrometry...also be of interest: Peptide and Protein Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry, J.E....
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[ 9 ] Bionformatics for Comparative (Organelle) Genomics  
Updated: (Aug 31, 2000)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...bioinformatics tools listed below assist in genome sequence analysis and megasequencing project management. They have been...formulas from M. Waterman Tools assisting DNA sequence analysis:FLIP, basic sequence analysis tool (ORF identification, conversion to reverse/complementary...
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[ 10 ] inmembrane  
Updated: (May 31, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...using web services and/or locally installed sequence analysis packages. inmembrane runs on Linux, OS X...You want to make your own protein sequence analysis work-flow, and would like to use...pypi/pip HMMER: this is the only sequence analysis software that is required to be locally...
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[ 11 ] www.phyloware  
Updated: (Nov 17, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...   XplorSeqMac OSX software for sequence analysis***Note:  The NCBI client provided by versions of XplorSeq earlier than 1.0.7 is deprecated.  Please download a new release of XplorSeq. XplorSeq ToolKitToolkit of sequence analysis software.  Includes C and C++ libraries...
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[ 12 ] About GATA  
Updated: (Jan 31, 2005)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...GATAGATA (a Graphic Alignment Tool for Comparative Sequence Analysis) GATA is a stand alone, platform independent, graphic alignment tool for comparative sequence analysis. It makese use of BLAST to graphically...
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[ 13 ] Coronavirus HKU1 study - home  
Updated: (Jan 15, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...known coronaviruses and provides some tools for sequence analysis.Website structureCoVDB: A database for batch coronavirus sequences retrieving. Genome describes the genome organization, characters (RNA structures, TRS regions, polyprotein cleavage sites) of coronaviruses.Tools provides some simple sequence analysis tools. You may check Publications, Contact information...
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[ 14 ] fastaptamer.html  
Updated: (Mar 4, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections." Molecular Therapy — Nucleic Acids. 2015. 4, e230; DOI: 10.1038/mtna.2015.4FASTAptamer is an easy-to-use and universally compatible toolkit designed for bench scientists to address the primary sequence analysis needs from high-throughput sequencing of combinatorial...
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[ 15 ] IMP Bioinformatics Group  
Updated: (Jun 25, 2003)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...similar and complementary tools available for protein sequence analysis, it can be valuable to consider the predictions from many tools at once.Using meta-analysis of different prediction results one can typically derive far reaching conclusions that can not be obtained using one automatic procedures alone. Results of such analyses are listed above under "Sequence Analysis...
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[ 16 ] TEMs  
Updated: (Dec 17, 2001)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Supplementary-SAGE-Seq.analysis MethodsFAQ In-depth Sequence-analysis Study of Proteins Differentially Expressed in Tumor...of on-line sites of the applied sequence analysis techniques a short overview on the sage...
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[ 17 ] IMSEQ - IMmunogenetic SEQuence Analysis  
Updated: (Sep 11, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...utf-8 IMSEQ - IMmunogenetic SEQuence AnalysisIMSEQ - IMmunogenetic SEQuence Analysis AboutIMSEQ is a fast, PCR and sequencing...fast and error aware approach to immunogenetic sequence analysis. Bioinformatics. 2015;31(18):2963–71...
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[ 18 ] CGView - Overview  
Updated: (Feb 11, 2005)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...formats or in Scalable Vector Graphics format. Sequence analysis visualization - CGView can be used to display the output of sequence analysis programs in a circular context. CGView features...
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Circular genome visualization and exploration using CGView.   Paper Page   (Feb 15, 2005)  
[ 19 ] CircuitsDB  
Updated: (Sep 10, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...and mouse genomes, based on a bioinformatic sequence-analysis work.In particular, this web-site is...These circuits were assembled throught a bioinformatic sequence-analysis pipeline, applied to the human and mouse...
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[ 20 ] GPI in complete genomes  
Updated: (Apr 5, 2001)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Lipid Anchor Project GPI Lipid Anchor Project Sequence analysis of GPI-anchored proteins on the proprotein...be characterized as GPI-anchored. Previous work: Sequence analysis of GPI-anchored proteins on the proprotein...
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[ 21 ] RPs [PIR - Protein Information Resource]  
Updated: (May 10, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...stable, scalable and unbiased proteome set for sequence analysis and functional annotationRelease 2017_04, April 12...stable, scalable and unbiased proteome set for sequence analysis and functional annotation.PLoS One. 2011 Apr...
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[ 22 ] psipred : index  
Updated: (Mar 22, 2007)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...ServerServer OverviewServer CitationHelp & TutorialsNewsHistorySoftware DownloadThe PSIPRED Protein Sequence Analysis WorkbenchThe PSIPRED Protein Sequence Analysis Workbench aggregates several UCL structure prediction methods...
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[ 23 ] Group I intron Sequence and Structure Database  
Updated: (Jan 15, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...containing secondary structure predicted by integrating comparative sequence analysis and minimal free energy algorithms. These introns...called group I ribozymes (Cech, 1990). Comparative sequence analysis reveals a common secondary structure of all...group I catalytic introns based on comparative sequence analysis. J. Mol. Biol., 216, 585-610. Rangan...R.R., Cech T.R.(1997) Mutagenesis and comparative sequence analysis of a base triple joining the two...
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GISSD: Group I Intron Sequence and Structure Database.   Paper Page   (Jan, 2008)  
[ 24 ] SBSPKS  
Updated: (Jun 25, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...     Structure Based Sequence Analysis of Polyketide Synthaseshttp://202.54.249...and Mohanty, D. (2010) SBSPKS: Structure based sequence analysis of polyketide synthases.   ...
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[ 25 ] Sequence Analysis - Universität Ulm  
Updated: (Feb 6, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...research/seqana/ text/html; charset=utf-8 Sequence Analysis - Universität UlmInstitut für Theoretische Informatik...Theoretische Informatik I Proseminar Graphalgorithmen ForschungForschung EDACC Sequence Analysis SAT Solving Dichte Packung von Garnrollen auf...Henning Wunderlich SonstigesSonstiges Startseite Adresse Impressum EN Sequence Analysis Space-efficient Parallel Construction of Succinct Representations...
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[ 26 ] Supplementary  
Updated: (Apr 8, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...was used as testing set. ClustalX (Multiple sequence analysis) MUltilpe sequence analysis of seven different functions of exotoxins are available. click here for clustalx sequence analysis. PDB codes of bacterial toxins are available...
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BTXpred: prediction of bacterial toxins.   Paper Page   (2007)  
[ 27 ] Uri's archived Cornell home page  
Updated: (Oct 13, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...as well as practical aspects of biological sequence analysis. While the more theoretical face of my...07, Spring 08, Fall 08CS 628 - Biological Sequence Analysis: Fall 04 Spring 06, Fall 07, CS...
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[ 28 ] Macromolecular Complexes  
Updated: (Oct 8, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii Macromolecular Complexes Structure-sequence analysis of macromolecular complexes HomeDocumentationExample: S7p © 2013...
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[ 29 ] XIC  
Updated: (Jun 4, 2002)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...text/html; charset=iso-8859-1 XICCOMPARATIVE SEQUENCE ANALYSIS OF THE X-INACTIVATION CENTRE REGION IN...
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[ 30 ] 1  
Updated: (May 29, 2006)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...1. What is LocRepeat? LocRepeat is a sequence analysis tools for finding regions of pseudo-periodic...
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[ 31 ] LIMS for Identification of Mutations by Sequencing and Tilling  
Updated: (May 4, 2007)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...includes steps for amplicon selection, primer design, sequence analysis, and annotation of mutations...
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[ 32 ] GeneTIER  
Updated: (Aug 8, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...electropherogram analysisNext Generation SequencingPrograms for next generation sequence analysis.Other softwarePrograms for performing miscellaneous data manipulation
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[ 33 ] Recall  
Updated: (May 18, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...ascii RecallRECall (beta v3.02) - Web based sequence analysis Login:Password:  If you do not...
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[ 34 ] InterPro Biomart < InterPro < EMBL-EBI  
Updated: (Jul 25, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...properly (Click here to enable JavaScript). InterProProtein sequence analysis & classification Examples: IPR020405, kinase, P51587, PF02932, GO...
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[ 35 ] Carnation DB  
Updated: (Jun 18, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...S, Kishida Y, Kohara M, Tabata S Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus...
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[ 36 ] SNP structure,function,disease:  
Updated: (Apr 14, 2006)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...non-synonymous SNPs based on structure and sequence analysis. News2008-10-29  dbSNP build 128...
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SNPs3D: candidate gene and SNP selection for association studies.   Paper Page   (Mar 22, 2006)  
[ 37 ] Introduction - MEME Suite  
Updated: (May 7, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...finger nuclease systems. The MEME SuiteMotif-based sequence analysis toolsMEMEMultiple Em for Motif ElicitationCentriMoLocal Motif Enrichment...
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[ 38 ] Help for Complexity program  
Updated: (Jun 24, 2004)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...charset=us-ascii Help for Complexity programLowComplexity: Sequence analysis software Please select one: Main site...
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[ 39 ] MotifLab - Regulatory Sequence Analysis Workbench  
Updated: (Jan 25, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...text/html; charset=us-ascii MotifLab - Regulatory Sequence Analysis WorkbenchHomeNewsDownloadScreenshotsDocumentationUser ManualVideo TutorialsPublicationsConference PresentationsBioRegSIG 20114th StatSeq Workshop...
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[ 40 ] LOESS correction for length variation in gene set-based genomic sequence analysis  
Updated: (May 22, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...length variation in gene set-based genomic sequence analysis Anton Aboukhalil1,2 and Martha L. Bulyk2...
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[ 41 ] CIGD (Cancer Related Immunological Gene Database)  
Updated: (Aug 11, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Moreover, the CIG-DB is equipped with sequence analysis tools based on BLAST and CLUSTALW, which...
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[ 42 ] Sequencing Home  
Updated: (Nov 25, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...used and processed by the Next Generation Sequencing analysis tools available through BioHPC.  The functions...
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[ 43 ] REBASE FTP Site  
Updated: (Jan 4, 2007)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...we are prepared to support each major sequence analysis package. How to: ftp ftp.neb.com...
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[ 44 ] Lobster protein sequence analysis  
Updated: (May 24, 2004)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...ascii Lobster protein sequence analysisLobster home pageProtein sequence analysis softwareContact:If you are interested in multiple...
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[ 45 ] bladder's index  
Updated: (Jul 8, 2002)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...791 sequences that are obtained by nucleotide sequence analysis of cDNA clones randomly isolated from six...
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[ 46 ] GNV-1 HOME  
Updated: (Aug 9, 2007)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...resources. These resources are of various types: Sequence analysis Gene prediction Signal predicition (transcription regulatory elements...
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[ 47 ] EDAM  
Updated: (May 16, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...about non-positional sequence features, typically a report on general molecular sequence properties derived from sequence analysis." [http://edamontology.org] namespace: data is_a: EDAM_data:2955 ! Sequence report [Term] id: EDAM...namespace: data is_a: EDAM_data:3031 ! Core data relationship: has_topic EDAM_topic:0080 ! Sequence analysis [Term] id: EDAM_data:2046 name: Sequence record lite (nucleic acid) subset: bioinformatics subset: data...
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[ 48 ] gobics.de: Software  
Updated: (Oct 30, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...alignments (Bielefeld) AGenDA - Gene prediction by comparative sequence analysis (Bielefeld...
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Multiple Sequence Alignment with DIALIGN.   Paper Page   (2014)  
[ 49 ] Whiteboard main page  
Updated: (Jun 15, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...from: Yang H et al. Deep mRNA Sequencing Analysis to Capture the Transcriptome Landscape of Zebrafish...
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[ 50 ] Mathews Lab Dynalign Download  
Updated: (Sep 20, 2006)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...by combining free energy minimization and comparative sequence analysis to find a low free energy structure...
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