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[ 1 ] Manchester Centre for Integrative Systems Biology  
Updated: (May 7, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Events Resources Links About UsResourcesCV expand CV expand is a text mining tool for automatic expansion of controlled vocabularies as a practical alternative to tailor-made named entity recognition methods. SpecificationImplementationPublicationsPeopleContact detailsSpecification We describe a text mining (TM) method for efficient corpus-based term acquisition as a...data resources for time- and cost-effective development of a text mining tool for expansion of CVs across various domains, as a...
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[ 2 ] Argo | A Web-based Text Mining Workbench  
Updated: (Mar 21, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...charset=utf-8 Argo | A Web-based Text Mining Workbench   A Web-based Text Mining WorkbenchLaunch now! Currently supported browsers: Chrome, Firefox...of components includes natural language processing and text mining analytics as well as user-interactive components...is developed by The National Centre for Text Mining (NaCTeM) at The University of Manchester. By using Argo you agree to the Terms and Conditions. Content copyright © 2012-2014, The National Centre for Text Mining, The University of Manchester This website is...
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[ 3 ] Compendium of Text Mining applications for life sciences (Bio-NLP tools)  
Updated: (Oct 6, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...text/html; charset=us-ascii Compendium of Text Mining applications for life sciences (Bio-NLP tools) Bio-NLP resources database (BioNLPdb) This page provides a compendium of Information Retrieval (IR), Information Extraction (IE), Text Mining and literature processing applications developed for providing...overview of currently existing applications in biomedical text mining: Krallinger M, Valencia A. and Hirschman L. Linking genes to literature: text mining, information extraction, and retrieval applications for biology...
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[ 4 ] hPRINT | Human Predicted Protein Interactome » Search  
Updated: (Nov 4, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...approaches in order to integrate various evidences (text mining, genetic relationships, evolutionary information, and domain profiles...STRING)coexpression (STRING)experimental (STRING)database (STRING)text mining (STRING)STRINGHiMapBioversetextmining cellular componenttextmining molecular functiontextmining biological...STRING)coexpression (STRING)experimental (STRING)database (STRING)text mining (STRING)STRINGHiMapBioversetextmining cellular componenttextmining molecular functiontextmining biological...STRING)coexpression (STRING)experimental (STRING)database (STRING)text mining (STRING)STRINGHiMapBioversetextmining cellular componenttextmining molecular functiontextmining biological...
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[ 5 ] ontogene  
Updated: (Jun 6, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...curation (NIH)VetSuissepast projectsRocheSASEBioBioTermEvomogAssisted curationODIN: descriptionpharmgkbCTDRegulonDBhome   Text Mining, Information Extraction,      and Assisted Curation in the biomedical domain OntoGene/BioMeXT is a research initiative which aims at pushing the boundaries of text mining for the biomedical literature. Our core...provide an independent and unbiased evaluation of text mining tools. We participated in the BioCreative challenges...
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[ 6 ] BioCreative - Track 1- Collaborative Biocurator Assistant Task (BioC)  
Updated: (Sep 3, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...of biomedical literature, finding biological evidence through text mining techniques has been a main research topic in the bio-text mining community. However, there have been few successes for improving biocuration throughput using text mining [5].The purpose of this task is...can assist in biocuration tasks by bringing text mining tool developers and database curators together. But, no attempt has been made to integrate text mining modules developed in the formal BioCreative PPI...
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[ 7 ] BioCreative - Track II- Workflow  
Updated: (Nov 19, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...the issues that would be useful to text mining developers who are seeking to produce algorithms...cases? dictionary? wikipedia? other database?Use of text mining tools a. What text mining tools do you currently employ in your workflow and what problems do these algorithms solve for you? b. What problems do you have that are not currently solved, but which you think could be amenable to a text mining solution (i.e., for which steps text...
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[ 8 ] PubMed-EX  
Updated: (Nov 5, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...with additional information retrieved from IISR & IASL text-mining services. PubMed-EX’s page mark-up includes section categorization, gene/disease name, and relation. The mark-ups of PubMed-EX can help researchers quickly focus on key information in retrieved abstracts and can provide additional background information on key terms. Furthermore, our text-mining server carries out all text-mining processing...
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[ 9 ] National Centre for Text Mining — NaCTeM — PathText2  
Updated: (Jul 1, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii National Centre for Text Mining — NaCTeM — PathText2 You are in: Home | PathText2 Home Aims & Objectives NaCTeM Services Text Mining Tools Text Mining Infrastructures Resources Terms & Conditions FAQ News & Events...carried out at the National Centre for Text Mining (NaCTeM), School of Computer Science, University of...
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[ 10 ] National Centre for Text Mining — NaCTeM — Paragraph Vector-based Topic Detection  
Updated: (Aug 15, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii National Centre for Text Mining — NaCTeM — Paragraph Vector-based Topic Detection You are in: Home | PV-based Topic DetectionHome Aims & Objectives NaCTeM Services Text Mining Tools Text Mining Infrastructures Resources Terms & Conditions FAQ News & Events...copyright © 2016, The National Centre for Text Mining — University of ManchesterSite maintained by Paul Thompson...
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[ 11 ] National Centre for Text Mining — NaCTeM — Anatomical Entity Tagger  
Updated: (Mar 19, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii National Centre for Text Mining — NaCTeM — Anatomical Entity Tagger You are in: Home | Anatomical Entity TaggerHome Aims & Objectives NaCTeM Services Text Mining Tools Text Mining Infrastructures Resources Terms & Conditions FAQ News & Events...copyright © 2016, The National Centre for Text Mining — University of ManchesterSite maintained by Paul Thompson...
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[ 12 ] PolySearch  
Updated: (Jun 30, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...2.0! A key challenge in biomedical text mining is to handle "comprehensive" or "associative" queries...also exploits a variety of techniques in text mining and information retrieval to identify, highlight and...S., Wishart D.S. PolySearch: a web-based text mining system for extracting relationships between human diseases...
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[ 13 ] NutriChem 1.0 Server  
Updated: (Jan 16, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...0 server is a database generated by text mining of 21 million MEDLINE abstracts, with information that links plant-based foods with their small molecule components and human disease phenotypes. The server contains text-mined data for 18,478 pairs of 1...Panagiotou G. and Kouskoumvekaki I. (2014) Integrated Text Mining and Chemoinformatics Analysis Associates Diet to Health...
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[ 14 ] plan2l  
Updated: (Jun 30, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...ascii PLAN2L : PLant ANnotation to Literature: a text mining and information extraction system for Arabidopsis thaliana PLAN2L (Plant annotation to literature) is a web tool for integrated text mining and literature-derived bio-entity relation extraction...Valencia: PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction. Nucl...
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[ 15 ] National Centre for Text Mining — NaCTeM — EventMine  
Updated: (Jun 25, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii National Centre for Text Mining — NaCTeM — EventMine You are in: Home | EventMine Home Aims & Objectives NaCTeM Services Text Mining Tools Text Mining Infrastructures Resources Terms & Conditions FAQ News & Events...copyright © 2016, The National Centre for Text Mining — University of ManchesterSite maintained by Paul Thompson...
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[ 16 ] Acromine dictionary  
Updated: (Apr 26, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...an abbreviation dictionary is necessary for advanced text-mining tasks to establish associations between abbreviations and...found the service. The National Centre for Text Mining is funded by JISC. Content copyright © 2012, The National Centre for Text Mining — University of ManchesterSite maintained by Paul Thompson...
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[ 17 ] PolySearch2  
Updated: (Jul 3, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...UsWelcome to PolySearch2A critical task in biomedical text mining is to discover potential associations between various types of biomedical entities. PolySearch 2.0 (polysearch.ca) is an online text-mining system for identifying relationships between human diseases...2015) PolySearch 2.0: A significantly improved text-mining system for discovering associations between human diseases...
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[ 18 ] gnTEAM | Text extraction, analytics, mining  
Updated: (Apr 24, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...host-pathogen interactions; conflicting statements in scientific texts. Mining Of Scientific Methodologies From Literature Capturing best and common practice for in-silico experiments. Mining Semi-Structured Reports Data quality in question-answer reports. Who we are?We are part of the Text Mining/NLP research group within the School of...
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[ 19 ] National Centre for Text Mining — NaCTeM — MLEE  
Updated: (Sep 10, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii National Centre for Text Mining — NaCTeM — MLEE You are in: Home | MLEE Home Aims & Objectives NaCTeM Services Text Mining Tools Text Mining Infrastructures Resources Corpora ACE Meta-Knowledge Anatomy...copyright © 2016, The National Centre for Text Mining — University of ManchesterSite maintained by Paul Thompson...
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[ 20 ] DisGeNET - a database of gene-disease associations NEW
Updated: (Jun 22, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...negative associations has been removed from the text mining sources (BeFree, GAD, and LHGDN) using regular...associated to disease have been annotated using text mining. Check some examples here. More information coming...2.1). We have new data from text mining using our BeFree system . April 26-27...info and data from two new resources: Text mining (TEXTM) and Rat Genome Database (RGD). December...
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[ 21 ] MutationFinder  
Updated: (Jan 3, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...our lab.)  Intrinsic evaluation of text mining tools may not predict performance on realistic tasks J. Gregory Caporaso, Nita Deshpande, J. Lynn Fink, Philip E. Bourne, K. Bretonnel Cohen, and Lawrence Hunter; Pacific Symposium on Biocomputing 13:640-651(2008). PDF(A discussion on how the performance of text mining systems on gold standard data relates to...
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[ 22 ] Apoptosis database  
Updated: (May 4, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...KeyWord search using BIANA8 or using ProMiner text mining tool9.We obtain a p-Value for our predictions given by: were P is the set of proteins in teh network, C the set of candiates, V the set of proteins in teh validation set and I the set of candidate proteins validated by text mining. The chance of success p corresponds to...
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[ 23 ] Manchester Centre for Integrative Systems Biology  
Updated: (May 15, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...very partial results. We have developed a text mining approach that retrieves relevant scientific publications and annotates them with information required for the kinetic modelling of a given pathway. Results: We developed an integrative approach, combining publicly available data and software resources, for the time- and cost-effective development of text mining tools for retrieval of information relevant to...
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[ 24 ] DIEGO Lab  
Updated: (May 8, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction...International Conference on. Vol. 2. IEEE, 2010.Text mining approaches for stock market prediction.Nikfarjam, Azadeh, Ehsan Emadzadeh, and Saravanan Muthaiyah."Text mining approaches for stock market prediction." Computer and...Bioinformatics 2008, 24(16):i126-i132.Glycoinformatics: Text Mining Lectin and Glycan Interactions in BioprocessesSamli, Kausar N., et al. "Glycoinformatics: Text Mining Lectin and Glycan Interactions in Bioprocesses." GLYCOBIOLOGY...
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[ 25 ] U-Compare - Share and Compare with UIMA  
Updated: (May 21, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...ComponentsContactU-Compare homepageU-Compare is an integrated text mining/natural language processing system based on the...© 2012-2017, The National Centre for Text Mining — The University of ManchesterTerms & Conditions...
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Deploying and sharing U-Compare workflows as web services.   Paper Page   (Feb 18, 2013)  
[ 26 ] mirtex  
Updated: (Sep 26, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...-8 Toggle navigation miRTexRESTful APIsPublicationContactmiRTex is a text-mining system that extracts miRNA-gene regulation relations...Vijay-Shanker. 2015. “miRTex: A Text Mining System for miRNA-Gene Relation Extraction.â...
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[ 27 ] iProLINK [PIR - Protein Information Resource]  
Updated: (Sep 11, 2015)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Knowledge) is a resource with access to text mining tools and annotated corpora developed in house...and phosphorylation-dependent protein-protein interactionseGIFT: a text mining tool that identifies informative terms (iTerms) and...
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[ 28 ] NaturalLanguage/FlySlip - CL Wiki (read only)  
Updated: (Apr 28, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...is to develop advanced technology for biomedical text mining, which can be tightly integrated into existing manual methods of literature curation with FlyBase serving as the main paradigm. We compiled new resources for development and evaluation and published the results of our research in the main text mining fora. An overview of the project is...
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Natural language processing in aid of FlyBase curators.   Paper Page   (Apr 14, 2008)  
[ 29 ] ibi.imim.es  
Updated: (Oct 11, 2006)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...pharmaceutical industry and health care by applying text mining and knowledge management, network biology and real...and machine learning, natural language processing and text mining, network and systems biology. Another important aspect...
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OSIRIS: a tool for retrieving literature about sequence variants.   Paper Page   (Oct 15, 2006)  
[ 30 ] Acromine Disambiguation  
Updated: (Apr 26, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...found the service. The National Centre for Text Mining is funded by JISC. Content copyright © 2012, The National Centre for Text Mining — University of ManchesterSite maintained by Paul Thompson...
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[ 31 ] The herb-chemical corpus  
Updated: (Sep 21, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...large-scale way if we apply a text mining approach. Thus, we constructed a corpus for plant and chemical entities and for the relationships between them to develop and evaluate such text mining approaches. The corpus currently contains 267 plant...
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[ 32 ] Data - DSV, Department of Computer and Systems Sciences - Stockholm University  
Updated: (Oct 13, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Hercules DalianisBookmark and shareTell a friendFocus areasClinical text mining Data science Mobile health Healthcare analytics   Health modeling Health communitiesContactsHercules Dalianis, professorUno Fors, professor Henrik Boström, professor Read moreStories of Health InformaticsInformation sheet Download the .pdf file  Health informatics (239 Kb) Health Technology Blog Clinical Text Mining GroupHEALTH BANK - Swedish Health Record Research Bank...
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[ 33 ] PRINCIPLE: PRINCE Plugin  
Updated: (Nov 25, 2011)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...on van Driel et al. (2006) A text-mining analysis of the human phenome. Eur J Hum Genet 14: 535-542 Phenotypic disease similarity (zipped)2011-09-1569MBPhenSim.zipDisease-disease phenotypic similarity, based on van Driel et al. (2006) A text-mining analysis of the human phenome. Eur J...
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[ 34 ] SynLethDB  
Updated: (Jan 7, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...assays, other related databases, computational predictions and text mining. In total, SynLethDB contains 34,089 synthetic...shRNA screenings (DECIPHER), computational predictions (DAISY) and Text Mining-based results. The pie chart on the...
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[ 35 ] Center for non-coding RNA in Technology and Health  
Updated: (Aug 30, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...file containing a synonym dictionary used for text-mining miRNA co-occurrences. String_protein_dictionary.gzA tab delimited text file derived from String containing a synonym dictionary used for text-mining miRNA co-occurrences. 1 and 2 element...
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[ 36 ] Manchester Institute of Biotechnology  
Updated: (Feb 15, 2006)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Supporting evidence-based public health interventions using text mining.Conformer selected top down sequencing - A novel...Supporting evidence-based public health interventions using text mining. Conformer selected top down sequencing - A novel...
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[ 37 ] BioContext  
Updated: (Aug 8, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...html; charset=us-ascii BioContextBioContextBioContext is a text mining system for extracting information about molecular processes...Bergman, Goran Nenadic. (2012) BioContext: an integrated text mining system for large-scale extraction and contextualisation...
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[ 38 ] iSimp: A Sentence Simplification System for Biomedical Text  
Updated: (May 22, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...the development of natural language processing and text mining tools. For this purpose, we developed iSimp...make iSimp readily usable in NLP and text mining tools, we participate in BioCreative IV Track...
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[ 39 ] LINNAEUS  
Updated: (Mar 11, 2010)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...million open access full-text articles.Open text mining initiative: Initiative to bypass copyright issues when releasing full-text articles for text-mining purposes (currently not maintained). Last updated: December...
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[ 40 ] Literature Based Kinase-Substrate Library at the Phosphosite Level  
Updated: (Feb 26, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Literature Mining This library was made by text mining abstracts from papers that describe specific phosphosites...Literature Mining This library was made by text mining abstracts from papers that describe specific phosphosites...
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KEA: kinase enrichment analysis.   Paper Page   (Mar 1, 2009)  
[ 41 ] myExperiment - Workflows  
Updated: (Sep 18, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...13 entrez 13 KeggID 13 text 13 text mining 12 abstracts 11More...Filter by licence by-sa 73 by-nd 16 by 1Filter by group SabrOndexProject 32 PhD Supplementary Information 9 Text mining network 5 eLicoTutorial 3 Bonn eScience Workshop...
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[ 42 ] T-HOD:Text-mined Hypertension, Obesity, and Diabetes candidate genes database  
Updated: (Feb 14, 2013)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...text/html; charset=us-ascii T-HOD:Text-mined Hypertension, Obesity, and Diabetes candidate genes database...
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[ 43 ] e-LiSe - text mining tool for Medline data - run  
Updated: (Apr 14, 2008)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...text/html; charset=us-ascii e-LiSe - text mining tool for Medline data - runToggle navigation e...
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[ 44 ] BIRI: BioInformatics Resources Inventory - Biomedical Informatics Group (UPM)  
Updated: (Oct 23, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...literature and indexed using Natural Language and Text Mining techniques. The index is automatically updated by...
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[ 45 ] drugQuest  
Updated: (Jun 14, 2016)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...us-ascii drugQuest Home Help DrugQuest - A Text Mining Workflow for Drug Association Discovery DrugQuest accepts...
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[ 46 ] e-MIR2: Electronic Medical Informatics Repository of Resources  
Updated: (Sep 14, 2012)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...literature and indexed using Natural Language and Text Mining techniques. The index is automatically updated by...
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[ 47 ] ProNormz  
Updated: (Mar 10, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Name © 2013 by Data Mining and Text Mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore...
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[ 48 ] Welcome to BioTextQuest  
Updated: (Nov 7, 2014)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...to BioTextQuest Home About Help A Biomedical Text Mining Suite for Concept Discovery BioTextQuest accepts a...
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[ 49 ] LitInspector - Literature and Pathway mining made easy!  
Updated: (Jun 30, 2009)   Rate Avg: ☆☆☆☆☆ ( no ratings )  
...Software Suite today.LitInspector performs large scale text mining on more than 20 million PubMed entries...
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[ 50 ] Proceedings | BioLINK Special Interest Group  
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...the {BioLINK SIG} 2013: {R}oles for text mining in biomedical knowledge discovery and translational medicine...
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